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View Structure Prediction Details

Protein: mira-PB
Organism: Drosophila melanogaster
Length: 799 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mira-PB.

Description E-value Query
Range
Subject
Range
MYH4_RAT - Myosin-4 OS=Rattus norvegicus GN=Myh4 PE=1 SV=1
337.0 [0..9] [786..1169]

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Predicted Domain #1
Region A:
Residues: [1-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSKAKLKR FNDVDVAICG SPAASNSSAG SAGSATPTAS SAAAAPPTVQ PERKEQIEKF  60
   61 FKDAVRFASS SKEAKEFAIP KEDKKSKGLR LFRTPSLPQR LRFRPTPSHT DTATGSGSGA 120
  121 STAASTPLHS AATTPVKEAK SASRLKGKEA LQYEIRHKNE LIESQLSQLD VLRRHVDQLK 180
  181 EAEAKLREEH ELATSKTDRL IEALTSENLS HKALNEQMGQ EHADLLERLA AMEQQLQQQH 240
  241 DEHERQVEAL VAESEALRLA NELLQTANED RQKVEEQLQA QLSALQADVA QAREHCSLEQ 300
  301 AKT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.522879
Match: 2i1jA
Description: No description for 2i1jA was found.

Predicted Domain #2
Region A:
Residues: [304-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AENIELVENL QKTNASLLAD VVQLKQQIEQ DALSYGQEAK SCQAELECLK VERNTLKNDL  60
   61 ANKCTLIRSL QDELLDKNCE IDAHCDTIRQ LCREQARHTE QQQAVAKVQQ QVESDLESAV 120
  121 EREKSYWRAE LDKRQKLAEN ELIKIELEKQ DVMVLLETTN DMLRMRDE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.30103
Match: 2iw5A
Description: No description for 2iw5A was found.

Predicted Domain #3
Region A:
Residues: [472-799]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLQKCEEQLR NGIDYYIQLS DALQQQLVQL KQDMAKTITE KYNYQLTLTN TRATVNILME  60
   61 RLKKSDADVE QYRAELESVQ LAKGALEQSY LVLQADAEQL RQQLTESQDA LNALRSSSQT 120
  121 LQSEERIDGD AQLAHYHELR RKDETREAYM VDMKKALDEF ATVLQFAQLE LDNKEQMLVK 180
  181 VREECEQLKL ENIALKSKQP GSASLLGTPG KANRSNTTDL EKIEDLLCDS ELRSDCEKIT 240
  241 TWLLNSSDKC VRQDTTSEIN ELLSAGKSSP RPAPRTPKAP HTPRSPRTPH TPRTPRSAAS 300
  301 TPKKTVLFAG KENVPSPPQK QVLKARNI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.221849
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle