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View Structure Prediction Details

Protein: Arc42-PA
Organism: Drosophila melanogaster
Length: 405 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Arc42-PA.

Description E-value Query
Range
Subject
Range
gi|77996195, gi|... - gi|78044080|ref|YP_360183.1| butyryl-CoA dehydrogenase [Carboxydothermus hydrogenoformans Z-2901], g...
483.0 [0..23] [402..1]

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Predicted Domain #1
Region A:
Residues: [1-405]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSVLTRSLC IARRSLNARQ IASLSALSET HQMLQKSCRD FANNELSGNA AKFDREHLYP  60
   61 EKQIRQMGEL GVMAVAIPEE LGGTGLDYVA YAIAMEEISR GCASAGVIMS VNNSLYLGPL 120
  121 LSFGNDAQKK DYITPFTTGE RVGCFALSEP GNGSDAGAAS TIATDKGDHF VLNGTKAWIT 180
  181 NAFEAEAAIV FATTNKQLKH KGISAFIVPK ATKGFSLGKK EDKLGIRGSS TCQLIFEDCV 240
  241 VPKENMLGEP GFGFKIAMQT LDAGRIGIAG QALGIGQAAL ELAVDYAQKR QAFGKPIAKL 300
  301 QSIQQKIADM SLAMESARLL TWRAAWLKDQ KQPYTKEAAM AKLAASEAAT LCSHQCIQIL 360
  361 GGMGYVTDMA AERHYRDARI TEIYEGTSEI QRLVIAGSIL KEYAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 123.0
Match: 1jqiA
Description: Butyryl-CoA dehydrogenase, C-domain; Butyryl-CoA dehydrogenase, NM domains
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle