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View Structure Prediction Details

Protein: Nup58-PA
Organism: Drosophila melanogaster
Length: 546 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Nup58-PA.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
333.0 [0..2] [359..1413]

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Predicted Domain #1
Region A:
Residues: [1-335]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTPTTNNAI GGATAATGAF AFGARPATTT APPPSFGAAT STPTFGAAPA TTSLFAAPAA  60
   61 TPAFGAPAAT PAFGAPASTP GFGATSTAAP AFGTAAATPA FGIPAATSAF GAPAATPAFG 120
  121 AAAATPAFGA PAATPAFGAP AATSAFGAPA ATTAFGAPAS TQASAFGAPA PAVGTVAPTF 180
  181 SFATPATSAP TTAPPAFGFG TTATTAAAAM PASLSSGIGS FSFPKPQATT AASLNFNTTT 240
  241 TTATAQPFNT GLKLGTTNAT TTLGGGGIFS KPAGQAAAPA ASTFVGLGGI DVTATQPKLG 300
  301 DNKQDGIKIK ETQVPDEIIK TVDGLKAYIK QQKTI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.69897
Match: 1y0fA
Description: No description for 1y0fA was found.

Predicted Domain #2
Region A:
Residues: [336-446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSDIGRTSTS KFTNVSHEIT NLKWALQNMA TLVEGSNQQI RLMRQETVKA IQSLEMAQRT  60
   61 QDTPAGLQFE NNAPFQYFQC LVAKYEQDLI AFRQQIALTE RHMHAISNPQ S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.221849
Match: 2fxoA
Description: No description for 2fxoA was found.

Predicted Domain #3
Region A:
Residues: [447-546]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISPDDLKRGF RQLNESFISL AGRLHEVHQR VEEHKEHYLN LRRYRLRDTT NVFERIDNPP  60
   61 LPTVEPQRIS SGPTPFSNIS ALMNKSYAAA ASSASNATGN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.0
Match: 2oszA
Description: No description for 2oszA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle