YRC Public Data Repository - Protein Structure Prediction

Protein:	CG7685-PA
Organism:	Drosophila melanogaster
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG7685-PA.

Description	E-value	Query Range	Subject Range
gi\|91080399 - gi\|91080399\|ref\|XP_966891.1\| PREDICTED: similar to Phosphoribosylformylglycinamidine synthase (FGAM ...	153.0	[0..41]	[213..2391]
gi\|195145683, gi... - gi\|195145683\|ref\|XP_002013821.1\| GL24345 [Drosophila persimilis], gi\|194102764\|gb\|EDW24807.1\| GL2434... gi\|125774563\|ref... - GA20519-PA [Drosophila pseudoobscura], GA20519 [Drosophila pseudoobscura pseudoobscura] gi\|54638279, gi\|... - gi\|54638279\|gb\|EAL27681.1\| GA20519 [Drosophila pseudoobscura pseudoobscura], gi\|125774563\|ref\|XP_001...	151.0	[0..1]	[213..1]
gi\|114637597 - gi\|114637597\|ref\|XP_508403.2\| PREDICTED: low density lipoprotein receptor-related protein 4 [Pan tro...	148.0	[0..32]	[209..203]
gi\|47076317, gi\|... - gi\|47271362\|ref\|NP_112612.1\| low density lipoprotein receptor-related protein 4 [Rattus norvegicus],...	147.0	[0..32]	[211..28]
gi\|17224416, gi\|... - gi\|27883856\|ref\|NP_766256.2\| low density lipoprotein receptor-related protein 4 [Mus musculus], gi\|1...	147.0	[0..32]	[211..28]
LRP4 - low density lipoprotein receptor-related protein 4	146.0	[0..32]	[209..73]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKTWVKREN IYFKPFYKQK SKMFLLLIFL VGISFIAYQA FSLNQLPGVP APWNLQQIKR  60
   61 KHQQMMQSLG SKQRDVDDFD GGGADAVAPA GGETSPVAGH EDPIKIVRGT RLFDYDAYKP 120
  121 NFEGKFRCLD GSKEIPFDHL NDNYCDCEED GSDEPSTNAC AKGRFYCRYQ KRHITGRGLD 180
  181 IYVASSRIND HVCDCCDGSD EWSTATKCPN DCA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.09691
Match:	1n7dA
Description:	Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits