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View Structure Prediction Details

Protein: CG18600-PA
Organism: Drosophila melanogaster
Length: 384 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG18600-PA.

Description E-value Query
Range
Subject
Range
gi|74268164, gi|... - gi|77735763|ref|NP_001029580.1| polymerase (RNA) I polypeptide E, 53kDa [Bos taurus], gi|74268164|gb...
405.0 [0..9] [384..12]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDKIIIESV CDHKRDENIP TILKFQNGSL LGDADFSMVE STVDGKKHAL VYAGDQVYTG  60
   61 EVKDSEEVDT YIFIRNKLTN KVKVVPVQEA LMYNHVYKKL ERQKRTGPTM SREHANKKLL 120
  121 KEFG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [125-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRKASRFVDN REQMMVNVEV MRQDLDETVN SSMLNEDEED GTLGDVSINN EEYLASIVPE  60
   61 FNKEATKVDE VYAVESLIPS SLLERLEEEA KVVFSTPVQT LPIKSEYLKS CLAKIQEN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [243-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVSSKRDFLH IKLIIYMDAL QSLISLRSRQ MQKAELSGIT EKIENDIRHR FADPNVAKKG  60
   61 TRTNFSSEKA LTHFIVMALL LSEKFEVDIN VLSRALATTK ARIKQYAHIV NALPKSNSDI 120
  121 LSLRLPSKVP ALKSGRRFQR KK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle