YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: tinc-PC
Organism: Drosophila melanogaster
Length: 986 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tinc-PC.

Description E-value Query
Range
Subject
Range
tinc-PB - The gene tincar is referred to in FlyBase by the symbol Dmel\tinc (CG31247, FBgn0038554). It is a pr...
870.0 [0..1] [968..1]

Back

Predicted Domain #1
Region A:
Residues: [1-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGKHQGSGA GASSGGGSLN SSLCNSVMTN ATTASSSLTQ QQQQLQAKYI KSKRHQSRYT  60
   61 SLQHSGHDSG SYLHLNSLWS IWYGVMLTLF QGYLAMHGAY RFLGCSLIPW KIEPVAELNL 120
  121 QIVLSGVVFI LLPVFFTSAV FKVGNLANDG IKLATGARER RCTLSPHDGL EEESRGGTLR 180
  181 ALWTHGGPTA AFVHIVIALC LLLPR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [206-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLLEARIIEN GLLPKEQIWA TELDFVVINR RNLMAMSVVG ATPFPRHHQP SNQQQSHHQH  60
   61 GRLNLTANSL EQDEEDYFND TMFTAIRGVP AGGNNNLFDL RPDRMANGRK AAKTTATTRT 120
  121 TTTANKLDAG KGQYFEVPDL INQDIDEEER QELEEAIRGE EDDGDEGVGV GEEGTVIMPD 180
  181 FDELAPRTAV GTSTTTAKAS SDADKLNVEN WQQLGTLGKA 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [426-587]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DASSSSSSTT STTTTTTTST TTTAATTTST RGTSTTTTTT TIKPMEITTS RQSAHHHHGK  60
   61 SRKHHKHHNK QRQQQPPRRH HVASHEQAIL ESFPEEETTT RDSSIHRVRP EVLPELPIPS 120
  121 TPVSASNSKI IAIKAKNQKR RISKRAAGVE IEPEYLLGDA NI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [588-691]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSSEFVAKSN EEEPEESEDF ELEDGDFQAV PALTPAPPAE PNGPKSGQDY VRLDGFAGML  60
   61 QLFFGIDKPI DVAIFSQPPS AEFVNLLCAL LVWSVRYPAV FWNT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [692-986]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKAFACVFSL QMVVAALDII LGYVGISNLY KLQIYAEAMP VHQPGLILNA VVTLALYLLS  60
   61 TALVLASSMV MYLYGHGRLA TRMRDRSIIT LKTHQTWIYF AHCASLCFVL ALAVVKAPLL 120
  121 NDLSATYKNN LHCPTFLAAL VGVTHLLLWI VIWLCLTIKR RWHFKLPPLD STYGGLLGKS 180
  181 SAQPLLMSSG QRTGSNSSSS GCNSTSTTVN GGDSKPDMMS TATSTELGMG MGMGIGGGIN 240
  241 GGMGGTGMGL AAQEDIYWPK LTPSSPKLKV TFNEVTSTSD DVLLIGDQEQ TDGKR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle