YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gish-PE
Organism: Drosophila melanogaster
Length: 463 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gish-PE.

Description E-value Query
Range
Subject
Range
FBpp0306673, gis... - The gene gilgamesh is referred to in FlyBase by the symbol Dmel\gish (CG6963, FBgn0250823). It is a ...
338.0 [0..1] [463..1]

Back

Predicted Domain #1
Region A:
Residues: [1-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRRERQASG GGPQTTTAGP SAGNVANATT ALAGGKSSSN NMYSTRQSVS TTTGVLMVGP  60
   61 NFRVGKKIGC GNFGELRLGK NLYNNEHVAI KMEPMKSKAP QLHLEYRFYK LLGSHAEGVP 120
  121 EVYYFGPCGK YNALVMELLG PSLEDLFDIC GRRFTLKSVL LIAIQLLHRI EYVHSRHLIY 180
  181 RDVKPENFLI GRTSTKREKI IHIIDFGLAK EYIDLDTNRH IPYREHKSLT GTARYMSINT 240
  241 HMGREQSRRD DLEALGHMFM YFLRGSLPWQ GLKADTLKER YQKIGDTKRA TPIEVLCDGH 300
  301 PEEFATYLRY VRRLDFFETP DYDFLRRLFQ DLFDRKGYTD EGEFDWTGKT MSTPVGSLQT 360
  361 GHEVIISPNK DRHNVTAKTN AKGGVAAWPD VPKPGATLGN LTPADR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.154902
Match: 2chlA
Description: No description for 2chlA was found.

Predicted Domain #2
Region A:
Residues: [407-463]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGSVQVVSST NGELNPDDPT AGHSNTPITQ QPEVEVVDET KCCCFFKRKK KKSTRQK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle