YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL9-PA
Organism:	Drosophila melanogaster
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL9-PA.

Description	E-value	Query Range	Subject Range
gi\|125774681, gi... - gi\|54638338\|gb\|EAL27740.1\| GA16276-PA [Drosophila pseudoobscura], gi\|125774681\|ref\|XP_001358599.1\| G...	250.0	[0..1]	[246..1]
MRPL9 - mitochondrial ribosomal protein L9	204.0	[0..22]	[245..49]
gi\|114559523 - gi\|114559523\|ref\|XP_513803.2\| PREDICTED: mitochondrial ribosomal protein L9 isoform 3 [Pan troglodyt...	204.0	[0..22]	[245..49]
gi\|109016246 - gi\|109016246\|ref\|XP_001108684.1\| PREDICTED: similar to mitochondrial ribosomal protein L9 [Macaca mu...	200.0	[0..22]	[245..49]
RM09_RAT - 39S ribosomal protein L9, mitochondrial OS=Rattus norvegicus GN=Mrpl9 PE=2 SV=1	198.0	[0..24]	[246..48]
gi\|73981588 - gi\|73981588\|ref\|XP_851404.1\| PREDICTED: similar to mitochondrial ribosomal protein L9 [Canis familia...	197.0	[0..23]	[245..52]
gi\|55245015, gi\|... - gi\|58378946\|ref\|XP_309139.2\| ENSANGP00000018677 [Anopheles gambiae str. PEST], gi\|55245015\|gb\|EAA049...	196.0	[0..12]	[246..38]
gi\|25347041 - gi\|25347041\|pir\|\|D87912 protein B0205.3 [imported] - Caenorhabditis elegans	194.0	[0..20]	[227..42]
RM09_MOUSE - 39S ribosomal protein L9, mitochondrial OS=Mus musculus GN=Mrpl9 PE=1 SV=2	192.0	[0..24]	[246..48]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKNIYVTPL NLLKSATSLQ QQVRTTFVLK RKYDPPLHKT NEKPRRMRAK NFIYELVDDT  60
   61 LVKKRPNIEV VLKTFVEGVG DKGDVVSMKP HFVYNKLLLP GLAAYNTPEN VAKYAKTEAE 120
  121 KSTVKHSSPY AQRTVNMLET IVLAVVMNKD EPWVLEPWHI KASLRKTGFY CREECITLPK 180
  181 ERIEGPDLKK ENKDFYCTVT INKLEQARLK CRLHHWSTDP SERLPYVLEH WKLQSEPLLD 240
  241 VCSPEKTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1p85F
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	8.6660890573497	bayes_pls_golite062009
structural molecule activity	8.10075613300028	bayes_pls_golite062009
catalytic activity	0.295853503406924	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: