YRC Public Data Repository - Protein Structure Prediction

Protein:	CG9288-PA
Organism:	Drosophila melanogaster
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9288-PA.

Description	E-value	Query Range	Subject Range
gi\|31207047, gi\|... - gi\|31207047\|ref\|XP_312490.1\| ENSANGP00000021928 [Anopheles gambiae str. PEST], gi\|21295993\|gb\|EAA081...	196.0	[0..1]	[191..29]
GCSH_ORYSI - Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1 GCSH_ORYSA - Glycine cleavage system H protein, mitochondrial precursor - Oryza sativa (Rice) GCSH_ORYSJ - Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1	187.0	[0..25]	[192..15]
GCSH_FLAAN - Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1	183.0	[0..27]	[192..16]
gi\|437993, gi\|21... - gi\|437993\|emb\|CAA81073.1\| H-protein [Flaveria cronquistii], pir\|\|S60195 glycine cleavage system prot... gi\|437999, gi\|36... - pir\|\|S60199 glycine cleavage system protein H precursor (clone HFP20) - Flaveria pringlei, gi\|43799...	183.0	[0..27]	[192..16]
gi\|54638639, gi\|... - gi\|54638639\|gb\|EAL28041.1\| GA21672 [Drosophila pseudoobscura pseudoobscura], gi\|125775293\|ref\|XP_001... gi\|54638639\|gb\|E... - GA21672-PA [Drosophila pseudoobscura], GA21672 [Drosophila pseudoobscura pseudoobscura]	183.0	[0..6]	[209..5]
GCSH_FLAPR - Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1	182.0	[0..27]	[192..16]

Back

Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVQADDPLE PFYFEHEEQE ICGKLVAPIT DSFQEDYPSV VDRFFTRYYY FKGDVPYQVL  60
   61 YHSNRICLIC LAPEHPALAQ GISSVNFDIG NVDRSQNVVK GKGKKGGMIL QAESTLALLT 120
  121 TANGGTYKVP SCIRGKLVEV NTAIVEEPKL LEQLPEGAGY FAILLPKIEN CDAIKASLLT 180
  181 QEQYEERLKS KNEGLPQIES TGDHAQNKNK EIQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1dxmA
Description:	Protein H of glycine cleavage system
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.624570847201433	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: