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View Structure Prediction Details

Protein: sqd-PB
Organism: Drosophila melanogaster
Length: 344 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sqd-PB.

Description E-value Query
Range
Subject
Range
gi|76689279 - gi|76689279|ref|XP_881322.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 1 ...
222.0 [0..6] [340..140]

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Predicted Domain #1
Region A:
Residues: [1-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAENKQVDTE INGEDFTKDV TADGPGSENG DAGAAGSTNG SSDNQSAASG QRDDDRKLFV  60
   61 GGLSWETTEK ELRDHFGKYG EIESINVKTD PQTGRSRGFA FIVFTNTEAI DKVSAADEHI 120
  121 INSKKVDPKK AKARHGKIFV GGLTTEISDE EIKTYFGQFG NIVEVEMPFD KQKSQRKGFC 180
  181 FITFDSEQVV TDLLKTPKQK IAGKEVDVKR ATPKPENQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.522879
Match: 1ha1A
Description: HNRNP A1 (RBD1,2) FROM HOMO SAPIENS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.950788308762215 bayes_pls_golite062009
nucleic acid binding 0.29562225149076 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [219-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGGMRGGPR GGMRGGRGGY GGRGGYNNQW DGQGSYGGYG GGYGGYGAGG YGDYYAGGYY  60
   61 NGYDYGYDGY GYGGGFEGNG YGGGGGGNMG GGRGGPRGGG GPKGGGGFNG GKQRGGGGRQ 120
  121 QRHQPY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.7
Match: 1wckA
Description: Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle