YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0311942, CG8...
Organism:	Drosophila melanogaster
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0311942, CG8....

Description	E-value	Query Range	Subject Range
gi\|114674911 - gi\|114674911\|ref\|XP_524071.2\| PREDICTED: solute carrier family 25, member 23 [Pan troglodytes]	269.0	[0..7]	[277..367]
gi\|50906063, gi\|... - gi\|50906063\|ref\|XP_464520.1\| putative Mcsc-pending-prov protein [Oryza sativa (japonica cultivar-gro...	268.0	[0..3]	[276..190]
gi\|33598954 - gi\|33598954\|ref\|NP_037518.2\| solute carrier family 25 member 24 isoform 1 [Homo sapiens]	267.0	[0..7]	[277..195]
SCMC1_RABIT - Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1	266.0	[0..7]	[277..195]
gi\|109012617 - gi\|109012617\|ref\|XP_001083681.1\| PREDICTED: similar to solute carrier family 25 member 24 isoform 2 ...	266.0	[0..7]	[277..176]

Back

Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHQERKSMW FFGGLASVGA AMVTHPLDLI KVTLQTQQGH LSVAQLIPKL AREQGVLVFY  60
   61 NGLSASVLRQ LTYSTARFGV YEAGKKYVNT DSFGGKVALA GASGLVGGIV GTPADMVNVR 120
  121 MQNDVKLPPQ QRRNYNNAFD GLVRVYRQEG FKRLFSGATA ATARGILMTI GQIAFYDQTK 180
  181 IYLLATPYFQ DNLVTHFTAS LVAGTIATTL TQPLDVLKTR SMNAKPGEFN GLWDIVKHTA 240
  241 KLGPLGFFKG YVPAFVRLGP HTIITFVFLE QLRLKFGTLN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.30103
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits