YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: Cpn-PB
Organism: Drosophila melanogaster
Length: 864 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpn-PB.

Description E-value Query
Range
Subject
Range
gi|37930527, gi|... - gi|37930527|gb|AAP74661.1| elicitor-like transglutaminase M81 [Phytophthora infestans], gi|23505399|...
318.0 [0..2] [863..717]

Back

Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPGTIPSPV SAPVAAPVTP SAVAAPVQVV SPAAVAPAPA APIAVTPVAP PPTLASVQPA  60
   61 TVTIPAPAPI AAASVAPVAS VAPPVVAAPT PPAASPVSTP PVAVAQIPVA VSAPVAPPV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AATPTPVAPI PVAAPVIATP PVAASAPTPA AVTPVVSPVI ATPPVVPANT TVPVAAPVAA  60
   61 VPAAVPVVAP VLAPAVAPAV APVVAETPAP PPVAEIPVAT IPECVAPLIP EVSVVATKPL 120
  121 AAAEPV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [246-339]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVAPPATETP VVAPAAASPH VSVAPAVETA VVAPVSASTE PPVAAATLTT APETPALAPV  60
   61 VAESQVAANT VVATPPTPAP EPETIAPPVV AETP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [340-557]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVASVAVAET TPPVVPPVAA ESIPAPVVAT TPVPATLAVT DPDVTASAVP ELPPVIAPSP  60
   61 VPSAVAETPV DLAPPVLPPV AAEPVPAVVA EETPETPAPA SAPVTIAALD IPEVAPVIAA 120
  121 PSDAPAEAPS AAAPIVSTPP TTASVPETTA PPAAVPTEPI DVSVLSEAAI ETPVAPPVEV 180
  181 TTEVAVADVA PPEAAADLII EPVEPPAPIP DLLEQTTS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [558-864]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPAVEAAEST SSPIPETSLP PPNEAVASPE VAVAPITAPE PIPEPEPSLA TPTEPIPVEA  60
   61 PVVIQEAVDA VEVPVTETST SIPETTVEYP VAEKVLDPAI TEAPVTTQEP DVANINDGAP 120
  121 ATEITTPAVE IVTAAAEVSD TAIPLIDPPV PQEIAVAEIP ETETKPAEVI VEQSTIPIEA 180
  181 PVPEVSKYAE PVISEAPAAE VPITAGDNPD NTSVGISEVV PTIAEKAVEE VPTSEIPEQS 240
  241 SSPSDSVPVA KITPLLRDLQ TTDVSLLAIA ATLDAIGEKL KDQKARNQQV MDRLCEIEKI 300
  301 LGPPKSN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.998
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle