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View Structure Prediction Details

Protein: HisCl1-PA
Organism: Drosophila melanogaster
Length: 426 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HisCl1-PA.

Description E-value Query
Range
Subject
Range
gi|119619265, gi... - gi|47496633|emb|CAG29339.1| GLRA2 [Homo sapiens], gi|40557002|gb|AAR87843.1| glycine receptor alpha2...
322.0 [0..12] [425..3]

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Predicted Domain #1
Region A:
Residues: [1-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSPTSKLVE FRCLIALAIY LHALEQSIQH CHCVHGYRNN TESAELVSHY ESSLSLPDIL  60
   61 PIPSKTYDKN RAPKLLGQPT VVYFHVTVLS LDSINEESMT YVTDIFLAQS WRDPRLRLPE 120
  121 NMSEQYRILD VDWLHSIWRP DCFFKNAKKV TFHEMSIPNH YLWLYHDKTL LYMSKLTLVL 180
  181 SCAMKFESYP HDTQICSMMI ESLSHTVEDL VFIWNMTDPL VVNTEIELPQ LDISNNYTTD 240
  241 CTIEYSTGNF TCLAIVFNLR RRLGYHLFHT YIPSALIVVM SWISFWIKPE AIPARVTLGV 300
  301 TSLLTLATQN TQSQQSLPPV SYVKAIDVWM SSCSVFVFLS LMEFAVVNNF MGPVATKAMK 360
  361 GYSDENISDL DDLKSALQHH RESIIEPQYD TFCHGHATAI YIDKFSRFFF PFSFFILNIV 420
  421 YWTTFL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.045757
Match: 2bg9E
Description: Refined structure of the nicotinic acetylcholine receptor at 4A resolution.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle