YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MED7-PA
Organism: Drosophila melanogaster
Length: 220 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MED7-PA.

Description E-value Query
Range
Subject
Range
gi|55730559 - gi|55730559|emb|CAH92001.1| hypothetical protein [Pongo abelii]
gi|55730559|emb|... - hypothetical protein [Pongo pygmaeus]
293.0 [0..3] [210..2]

Back

Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQETQVSS LPMPPERYIA NYTDENIRRN RAPRPPPPPA QHEVYSMFGI QYNNDEMIRS  60
   61 LESQNIKRLI PIHFDRRKEL KKLNHSLLVN FLDLIDFLIL NPD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 20.267606
Match: PF05983.2
Description: No description for PF05983.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPRRTEKIDD ISLLFVNMHH LLNEFRPHQA RETLRVMMEM QKRQRVETAA RFQKHLERVR  60
   61 EIVNTAFSAL PVLDDDDDSG GAKIKTEVDP LEANAAAKND PSYQHDRMLC KLVDAIE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.09691
Match: 1ykeA
Description: Structure of the mediator MED7/MED21 subcomplex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle