YRC Public Data Repository - Protein Structure Prediction

Protein:	CG16790-PA
Organism:	Drosophila melanogaster
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG16790-PA.

Description	E-value	Query Range	Subject Range
gi\|68051333 - gi\|68051333\|gb\|AAY84930.1\| IP09928p [Drosophila melanogaster]	347.0	[0..1]	[258..1]
gi\|255683453, gi... - gi\|74219896\|dbj\|BAE40531.1\| unnamed protein product [Mus musculus], gi\|74183292\|dbj\|BAE22567.1\| unna...	334.0	[0..1]	[258..1]
USB1_RAT - U6 snRNA phosphodiesterase OS=Rattus norvegicus GN=Usb1 PE=2 SV=1	334.0	[0..1]	[258..1]
USB1_BOVIN - U6 snRNA phosphodiesterase OS=Bos taurus GN=USB1 PE=2 SV=1	320.0	[0..1]	[258..1]
C16orf57 - chromosome 16 open reading frame 57	318.0	[0..1]	[258..1]
gi\|55643949 - gi\|55643949\|ref\|XP_511000.1\| PREDICTED: similar to Chromosome 16 open reading frame 57 [Pan troglody...	313.0	[0..1]	[258..1]
gi\|73950337 - gi\|73950337\|ref\|XP_853879.1\| PREDICTED: similar to CG16790-PA [Canis familiaris]	283.0	[0..21]	[257..8]
USB1_XENLA - U6 snRNA phosphodiesterase OS=Xenopus laevis GN=usb1 PE=2 SV=1	280.0	[0..1]	[257..1]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVDYGGSS SSASEDEDCT ENIQTPALIT LKRPALPKAA TLLGPKKPKP EEFVEDVVDD  60
   61 PAEHGGRMRS FKHERGNWAT YVYVPATACV DQLEEFQTEA IARLEPHLEL QPNESLHLSL 120
  121 SRTVVLQYHQ IDEFSRSLQS ALNSSAGFAA TLQGLRIYTN EERTRTFIAA PLDAAFVEKM 180
  181 TAILQPIDQV MLDYRLQQFY DPASFHVSLL WCVGDQETLL NEKLTELKEL LDDQDKLCLA 240
  241 VNEVHLKCGN KDFTYSLK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.73
Match:	1iuhA
Description:	2'-5' RNA ligase LigT
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.323890296968392	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: