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View Structure Prediction Details

Protein: AP-47-PA
Organism: Drosophila melanogaster
Length: 426 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AP-47-PA.

Description E-value Query
Range
Subject
Range
gi|194112543, gi... - gi|195153138|ref|XP_002017486.1| GL21499 [Drosophila persimilis], gi|194112543|gb|EDW34586.1| GL2149...
gi|54639313, gi|... - gi|54639313|gb|EAL28715.1| GA21750 [Drosophila pseudoobscura pseudoobscura], gi|125777313|ref|XP_001...
gi|125777313|ref... - GA21750-PA [Drosophila pseudoobscura], GA21750 [Drosophila pseudoobscura pseudoobscura]
470.0 [0..1] [426..1]

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Predicted Domain #1
Region A:
Residues: [1-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSAIFVLD VKGKVLISRN YRGDNIDMAV IDKFMPLLME REEEGLITPI LQTAETTFAY  60
   61 IKTNNLYIVS TTPRNKNVNI ALVFVFLHKI AQVFVEYFKE LEEESIRDNF VIIYELLDEL 120
  121 LDFGYPQTTD SKILQEYITQ EGHKLELQPR IPVAVTNAVS WRSEGIKYRK NEVFLDVIES 180
  181 VNLLANANGN VLRSEIVGAI KMRVYLSGMP ELRLGLNDKV LFESTGRGKS KSVELEDVKF 240
  241 HQCVRLSRFE NDRTISFIPP DGEFELMSYR LNTHVKPLIW IESVIERHAH SRVEYMIKAK 300
  301 SQFKRRSTAN NVEIVIPVPA DADSPKFKTT IGSCKYAPEQ NAIIWTIKSF PGGKEYLMRA 360
  361 HFGLPSVESE DNTEGKPPIQ VRFEIPYFTT SGIQVRYLKI IEKSGYQALP WVRYITQNGD 420
  421 YQLRTN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 129.0
Match: 1w63M
Description: AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle