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View Structure Prediction Details

Protein: RagA-PA
Organism: Drosophila melanogaster
Length: 311 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RagA-PA.

Description E-value Query
Range
Subject
Range
gi|114623963 - gi|114623963|ref|XP_528488.2| PREDICTED: similar to Rraga protein [Pan troglodytes]
275.0 [0..1] [302..277]

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Predicted Domain #1
Region A:
Residues: [1-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKVLLMGK SGSGKTSMRS IIFANYIARD TTRLGATIDV EHSHVRFLGN LVLNLWDCGG  60
   61 QEGFMKQYFA QQRDNIFRNV EVLIYVFDVE SQEIERDIHY YQSCLEALLQ NSPEAKIFCL 120
  121 VHKMDLVPEG LRESVFTERM EDLIKLSKPG NVTCFRTSIW DETLYKAWSS IVTMLIPNVA 180
  181 ALENSVTHFG NVIEADEVLL FEKATFLVIS HCQSKKNRDS HRFEKVSNII KQFKLSCSKL 240
  241 GAKFQSMEVR NSAFAAFIDT FTSNTYVMVV MSDPTLPSEA TLVNIRNARK YFEELENPSN 300
  301 SAINHHGQRY H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.221849
Match: 1zo1I
Description: IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle