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View Structure Prediction Details

Protein: Ir85a-PA
Organism: Drosophila melanogaster
Length: 605 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ir85a-PA.

Description E-value Query
Range
Subject
Range
gi|227860 - gi|227860|prf||1712321A kainate receptor KA-1
417.0 [0..9] [597..227]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIQWLKHIL LLAILVNLAG TRENHIPLDL KKSSIVMVKM SQILCKARIK VLFVYFENQT  60
   61 SHEHTGQILK EVTKCDISNQ NTPLEAVKDD GILMYMVMIT TNISQPLELS LIRKKSAAKH 120
  121 RSHVFLLVRD ADTVSDAWMR ASFRQFWKIW LLNIVILYWR DGRLNAYRYN PFMDNYLIPV 180
  181 DNKPNEVPTL EQLFP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [196-605]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTIPNMQRKP LRMCIYKDDV RAIFWRQGTI LGTDGLLAAY VAERLNATMM ITRPHSYNNH  60
   61 NLSSDICFLE VAKEYVDVAM NIRFLVPDTF RKQAESTVSH TRDDLCVIVP KAKTAPTFWN 120
  121 IFRSFGSLVW ALILVSVLVA NVFCYILKSE VGRVPMQLFA GALTMPMTQI PPNHSIRLFL 180
  181 IFWLYFGLLI CSAFKGNLTS MMVFQPYLPD INQLGALARS HYHIIIRPRH VKHIQHFLTL 240
  241 GHKHESRIRE QMLEVSDTQM YEMMRNNDIR FAYLEKYHIA RFQVNSRVHM HLGRPLFHLM 300
  301 NSCLVPFHAV YIVPYGSPYL GFLDSLIRSS HEFGFERYWD RIMNSAFIKS GVKVVNRRRG 360
  361 SGNDEPVVLK LQHFHAVFAL WLVGIGMACI VLAWEHLTHN YNLAVTKRRD 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.69897
Match: 1yaeA
Description: Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle