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View Structure Prediction Details

Protein: CG7918-PA
Organism: Drosophila melanogaster
Length: 1019 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG7918-PA.

Description E-value Query
Range
Subject
Range
gi|125773747, gi... - gi|54637867|gb|EAL27269.1| GA20686-PA [Drosophila pseudoobscura], gi|125773747|ref|XP_001358132.1| G...
348.0 [0..1] [1019..109]

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Predicted Domain #1
Region A:
Residues: [1-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSLNKSAGE EELTGLNGNS SDSIYTIKNK WITDWSLRRE RDKLCSFIFK RVLTHTECKR  60
   61 LLEAAKIYGE SSDFNSWPVN EQLQWYRNFD VNNTNLLLAV RNQSSDGG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [109-416]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STMSGSSSDS EILGPVLPPF ALWQTILIAI CLAICIILTV GGNILVLLAF IVDRNIRQPS  60
   61 NYFIASLAAT DMLIGTVSMP FYTIYVLKGY WDLGPMLCDL WLSVDYTVCL VSQYTVLLIT 120
  121 IDRYCSVKIA AKYRSWRTRT RVIYMVTITW IIPALLFFIS IFGWEHFTGK RDLLPGQCAV 180
  181 QFLKDPIFNT ALIIGYYWTT LIVLFVLYAG IYKTAYDMQK RSEAKQRKMQ SMVALSAGAM 240
  241 SGMAGHAAGI GVIEEKILKT KVELAGDQTD LDSACTTVIK RLSGSGQANP LAVATEEVEK 300
  301 MTPEQRRA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.045757
Match: 2j4yA
Description: No description for 2j4yA was found.

Predicted Domain #3
Region A:
Residues: [417-581]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAAKIQEEAK KREAAVDAEK SERSSSPAFD SDEESSVNQA QQLITQQKLN NMRKRSSIGL  60
   61 VFGAQAALLA TRGKGNLQKS TTNSKSIEAM HQYHHHQQHH HNQSPLQRAQ SKEEMRSLHH 120
  121 HQNQQQPHHQ HHQNQPNPPL DRPKRTSCST LSQIAEHDRL VDLSA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [582-732]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPTLLNTSDP LSPVDLAPIE VPSDQVHQGL VQTILPPPDA FQCPTPLSDD YSDRPFGNSS  60
   61 GNSELALTYD LMTNSELRYM DESSAMLASV TANSTTSPND SVQGKPPVLP PPPPARRNPP 120
  121 KSNLNQSLSQ TPSQNQSPSQ SLSLNLNPNH N

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [733-921]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSQSQSIEEA VAIEKRLLVS YTGIEDFAKV RRESCIEAIC LLDVPGKLAA DCPHRRASSP  60
   61 METSSKDAIL YSPMPPMPLS PKVKTSTPQT GTPQSAAGVT PPVPLERIEE RETSDSNTNK 120
  121 MPSTSGTTSS TGGVGGGGEQ DGVGATKKNA GDDDANREEK SLAASRNSSK RAFIHSIGKH 180
  181 FKSKKALPL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [922-1019]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILGVGGRQKS KSENRARKAF RTISFILGCF VACWTPYHVL ALVEGFCRHP PCINEHLYMF  60
   61 SYFLCYANSP MNPFCYALAN QQFKKTFTRI LKGDLHMT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.14
Match: 1f88A
Description: Rhodopsin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle