YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: Alh-PB
Organism: Drosophila melanogaster
Length: 824 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Alh-PB.

Description E-value Query
Range
Subject
Range
gi|39592304, gi|... - gi|39592304|emb|CAE75525.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi|187020927|em...
gi|157762282 - gi|157762282|ref|XP_001673483.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]
306.0 [0..2] [787..1095]

Back

Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMMDTMDTS QSQPMDVAPA VAVAATSGAA LVDFTAAMVS MAATAEAESA ESNNNHIDMA  60
   61 EYKEHRKNKK KKREKREREG KEHRHHKHRD REHREHRRHR DRD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDKERDREGH HHHPTHHHPN NSQHSTSASS SPSSASTTPS ATIEYVGGSA SASPSYLGGG  60
   61 ATGTGAAVGA TTTYPHNLKI RFLLSGQRTE LSPPTHQTSA TAEVNAPLAS STSASIAVTA 120
  121 SATAASAPPA TGTTTLGSSI SGNAGSTSSG NSSGVSATGG AQSAVGSGGY PKTESSKSSG 180
  181 TASAGSGSGS SSNTSSTKHG SNIKDIS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [311-527]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSNQQASTA SSSSAPSLYV SVPLSTANVP GINLPTSSTS SSTTSESHSA SSRSSGAQSQ  60
   61 HQQQLSNALV GPPMGGSAGA FHGGTTSAGS SSVIQQQSGK SSPALGTLVS GNSGGSIISA 120
  121 SGFPLPSGNL TATTTESGNL KISYEKQTTR VQQLQEQEAP PARRSRTLDL STASASSSSP 180
  181 SAVPATTSPL VVLSNQLPLN SVAASSSTGG LKFTYES

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [528-606]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTQMDVPMMP VSAIKDSPPS SPGSEIGSAM HSATTAPGSL TGASTAATAQ PGNVRKRGRK  60
   61 AKDATIAAAA AAAAAAAAL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [607-752]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNSQQDLKDV RILQNGASNT PGNPAGSTPT PPATPASSNA VSSASSIITH TAAHMLGNQI  60
   61 NPNSSVAQKL SEQLHMEVQD HSIYTPDSMN SQYAGVPFPG KQRNSTAVPS NATPAQNPLQ 120
  121 SMFSGGGMNG NMPIPQSLEQ LLERQW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [753-824]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQGSQFLMEQ AQHFDIASLL NCLHQLQSEN LRLEEHVTSL IARRDHLLAV NARLQIPLST  60
   61 IASNTKAEAH GK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle