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View Structure Prediction Details

Protein: l(3)82Fd-PK
Organism: Drosophila melanogaster
Length: 1055 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(3)82Fd-PK.

Description E-value Query
Range
Subject
Range
l(3)82Fd-PO - The gene l(3)82Fd is referred to in FlyBase by the symbol Dmel\l(3)82Fd (CG32464, FBgn0013576). It i...
561.0 [0..1] [1055..1]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNVILTSQY YWSRRASQDV SSLSRSVDNL AIPVRRSKSR SVDHGLAAPF DLDSLRSKVE  60
   61 QRFESVDKLS RQKSSLPTIP TISYTVGNRD TLTSVAARFD TTPSELTHLN RLNSSFIYPG 120
  121 QQLLVPDK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.59
Match: 2djpA
Description: No description for 2djpA was found.

Predicted Domain #2
Region A:
Residues: [129-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAKDDASSSS THDADGASLS GKSSPVERKL SGDESREKDI LEGLRPGSPK PGHIERVGGS  60
   61 SQQQQAEEEA NKSDDPVITQ RFLKINVRHI TDGQGVVGGV LLVTPNAVMF DPNVSDPLVI 120
  121 EHGPESYGVI APMELVVNAA IFHDIAHMRV AGGAGQGLNS ASGDAEKPEI YYPKPVLVEE 180
  181 DSKELPEQQS LLGEDGNKRL DAEIGSLEIA DDQESLCSST GRDGDA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [355-596]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPKAFDRERV EDSSMEAKDS AKTDALDDED KKAGLGLSST RSTLEERRKS LLDHHWAIPS  60
   61 KDRSSEDEGD NESNVTVDSG ARVQDPHSAN SSVSGVPLSQ PPVAAAAAAA AVAPASAVVP 120
  121 LPPSGIDLEH LEQLSKQSCY DSGIDIREPV PNVQPIPKKT VYSDADIVLS SDWVPPKTIV 180
  181 PTHFSESPPR STILGQSLDA GTGGAGGVRK KTSSVSFSVD DEAAQQAQAQ SAALAVTDKQ 240
  241 AD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [597-834]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKNKMLKRLS YPLTWVEGLT GEGGAVPPGG VGSGSLNKSG DTDSAPNTGD SNQSVFSKVF  60
   61 SRRSSIGTFI RPHSSEGTSS STKLKEAKQA PKLDYRSMVS MDDKPELFIS VDKLIPRPAR 120
  121 ACLDPPLYLR LRMGKPIGKA IPLPTSVMSY GKNKLRAEYW FSVPKNRVDE LYRFINTWVK 180
  181 HLYGELDEEQ IKARGFELIQ EDTEWTKSGT TKAGMGGGSQ DGEEISDLTR ESWELIKA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [835-1055]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFAKTYKIIK TASHAASHDL EMLGGEVLSM STDEYRKTSL FATGSFDLDF PIPDLIGKTE  60
   61 ILTEEHREKL CSHLPARAEG YSWSLIFSTS QHGFALNSLY RKMARLESPV LIVIEDTEHN 120
  121 VFGALTSCSL HVSDHFYGTG ESLLYKFNPS FKVFHWTGEN MYFIKGNMES LSIGAGDGRF 180
  181 GLWLDGDLNQ GRSQQCSTYG NEPLAPQEDF VIKTLECWAF V

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle