YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL15-PA
Organism:	Drosophila melanogaster
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL15-PA.

Description	E-value	Query Range	Subject Range
gi\|17861822 - gi\|17861822\|gb\|AAL39388.1\| GM01846p [Drosophila melanogaster]	344.0	[0..1]	[286..1]
gi\|31240343, gi\|... - gi\|31240343\|ref\|XP_320585.1\| AGAP011946-PA [Anopheles gambiae str. PEST], gi\|21287938\|gb\|EAA00259.1\|... AGAP011946-PA - mRpL15: 39S ribosomal protein L15, mitochondrial\|protein_coding\|3L:35475971:35476930:1\|gene:AGAP0119...	332.0	[0..4]	[286..3]
gi\|54641729\|gb\|E... - GA18745-PA [Drosophila pseudoobscura], GA18745 [Drosophila pseudoobscura pseudoobscura] gi\|54641729, gi\|... - gi\|54641729\|gb\|EAL30479.1\| GA18745 [Drosophila pseudoobscura pseudoobscura], gi\|125977890\|ref\|XP_001...	326.0	[0..1]	[286..1]
RM15_MOUSE - 39S ribosomal protein L15, mitochondrial OS=Mus musculus GN=Mrpl15 PE=1 SV=1	318.0	[0..1]	[284..1]
gi\|55630718 - gi\|55630718\|ref\|XP_528136.1\| PREDICTED: mitochondrial ribosomal protein L15 isoform 2 [Pan troglodyt... MRPL15 - mitochondrial ribosomal protein L15	318.0	[0..1]	[284..1]
gi\|73999382 - gi\|73999382\|ref\|XP_535072.2\| PREDICTED: similar to mitochondrial ribosomal protein L15 [Canis famili...	314.0	[0..1]	[284..1]
RM15_BOVIN - 39S ribosomal protein L15, mitochondrial OS=Bos taurus GN=MRPL15 PE=1 SV=1	310.0	[0..1]	[284..1]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHLRETSDK ALKLLRTLPR VQIGNLRPNP NSKQNDKRGR AQHGGDKHGA GNKGSGQRQN  60
   61 FMRLGYETGN QPFYLRFPYE PYYKGHHLKR QYPPISLLQL QVLIDTNRID ISQPIDISTL 120
  121 CNSGLLKLKP AEMEYGFQLT DDGLDNFQAK INIEVQHASE AVIAAIEKNG GVIRTAYYDP 180
  181 RSLHMLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.221849
Match:	1p85J
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.4893803036544	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [188-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPKKWFEKGV PIPSRMLPPQ DAVDYYTDPK NRGYLANPEA ISQDRLVLAQ KYGYQLPKIE  60
   61 EDSAYEMLTT AKDPRQVFYG LEPGWLINIV DKTIIKRKQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.511	N/A	N/A	a.60.1	SAM/Pointed domain
View	Download	0.448	N/A	N/A	d.15.4	2Fe-2S ferredoxin-like
View	Download	0.398	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.398	N/A	N/A	a.5.3	N-terminal domain of phosphatidylinositol transfer protein sec14p
View	Download	0.347	N/A	N/A	a.2.11	Fe,Mn superoxide dismutase (SOD), N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: