YRC Public Data Repository - Protein Structure Prediction

Protein:	CG32177-PA
Organism:	Drosophila melanogaster
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG32177-PA.

Description	E-value	Query Range	Subject Range
gi\|182891694, gi... - gi\|41054451\|ref\|NP_955960.1\| Nedd4 family interacting protein 1 [Danio rerio], gi\|27882287\|gb\|AAH444...	252.0	[0..51]	[267..2]
gi\|73989388 - gi\|73989388\|ref\|XP_534156.2\| PREDICTED: similar to Nedd4 family interacting protein 2 [Canis familia...	243.0	[0..3]	[266..53]
gi\|55730833 - gi\|55730833\|emb\|CAH92135.1\| hypothetical protein [Pongo abelii] gi\|197102204 - gi\|197102204\|ref\|NP_001126248.1\| Nedd4 family interacting protein 2 [Pongo abelii]	240.0	[0..33]	[266..3]
gi\|31455517, gi\|... - gi\|31455517\|dbj\|BAC77384.1\| putative MAPK activating protein [Homo sapiens], gi\|19913452\|gb\|AAH26126... gi\|168269712 - gi\|168269712\|dbj\|BAG09983.1\| NEDD4 family-interacting protein 2 [synthetic construct]	240.0	[0..33]	[266..3]
gi\|114650197 - gi\|114650197\|ref\|XP_522688.2\| PREDICTED: similar to putative MAPK activating protein [Pan troglodyte...	235.0	[0..24]	[266..254]
gi\|47937415 - gi\|47937415\|gb\|AAH71237.1\| Nedd4 family interacting protein 2 [Mus musculus]	234.0	[0..33]	[266..3]
gi\|50755218 - gi\|50755218\|ref\|XP_414658.1\| PREDICTED: similar to Nedd4 family interacting protein 1; Nedd4 WW doma...	234.0	[0..61]	[267..111]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHNNQPSPG DDQLGPPKAD FSAPPPYEAN VGHGQQVALP AQMPPLALAT PDPSQIPIQM  60
   61 QVQLPSQADL MNAQLPPEIH GKLPTYEEVQ MEKSLNGELP PAFLTLPSSQ QLPPPPNPLL 120
  121 PPNPLRDGAA AVRSAQPALT FIAIDASDPE NSLSTTDNL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.39794
Match:	1oqyA
Description:	Structure of the DNA repair protein hHR23a
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [160-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGTDIMFITA FIVAFLFNWI GFLMLTCFCH TIAARYGALS GFGLSLAKWT LIVKHSTDLA  60
   61 SHENSWLWWL ICAFGFLISI RALIQYVSIK RSWRLLSASA QERLLFFY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits