YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0312080, RpS...
Organism:	Drosophila melanogaster
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0312080, RpS....

Description	E-value	Query Range	Subject Range
RS4X_MACFU - 40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3 RS4X_MESAU - 40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2 RS4X_FELCA - 40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2 RS4X_CHLAE - 40S ribosomal protein S4, X isoform OS=Chlorocebus aethiops GN=RPS4X PE=2 SV=3 gi\|6519820 - gi\|6519820\|dbj\|BAA87932.1\| ribosomal protein S4X (RPS4X) [Macaca fuscata] gi\|1083572 - gi\|1083572\|pir\|\|A55276 ribosomal protein S4 - western wild mouse gi\|2148029, gi\|2... - gi\|220321\|dbj\|BAA01858.1\| ribosomal protein S4 [Mesocricetus sp.], gi\|2148029\|pir\|\|I48169 ribosomal ... gi\|57135 - gi\|57135\|emb\|CAA32427.1\| unnamed protein product [Rattus rattus] gi\|114689107, gi... - gi\|114689107\|ref\|XP_001139217.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|114... gi\|149759012, gi... - gi\|255653020\|ref\|NP_001157422.1\| ribosomal protein S4 [Equus caballus], gi\|149759012\|ref\|XP_00148806... gi\|123993841, gi... - gi\|123996497\|gb\|ABM85850.1\| ribosomal protein S4, X-linked [synthetic construct], gi\|123993841\|gb\|AB... RS4X_MOUSE - 40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=1 SV=2 gi\|109131194 - gi\|109131194\|ref\|XP_001093393.1\| PREDICTED: similar to 40S ribosomal protein S4, X isoform [Macaca m... gi\|90075468 - gi\|90075468\|dbj\|BAE87414.1\| unnamed protein product [Macaca fascicularis] RS4X_RAT - 40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2 RPS4X - ribosomal protein S4, X-linked RS4_BOVIN - 40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3 ENSCJAT00000008044 - null	488.0	[0..1]	[259..1]
RS4_CHICK - 40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2	487.0	[0..1]	[259..1]
RS4_XENTR - 40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3	487.0	[0..1]	[259..1]
gi\|74179765 - gi\|74179765\|dbj\|BAE22507.1\| unnamed protein product [Mus musculus]	487.0	[0..1]	[259..1]
gi\|57090063 - gi\|57090063\|ref\|XP_537399.1\| PREDICTED: similar to 40S ribosomal protein S4, X isoform [Canis famili...	487.0	[0..1]	[259..1]
RS4_CRIGR - 40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2	487.0	[0..1]	[259..1]
gi\|126722859, gi... - gi\|61835740\|ref\|XP_591678.1\| PREDICTED: similar to 40S ribosomal protein S4, X isoform [Bos taurus],...	486.0	[0..1]	[259..1]
gi\|227229 - gi\|227229\|prf\|\|1617101C ribosomal protein S4	486.0	[0..1]	[259..1]

Back

Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGPKKHLK RLAAPKAWML DKLGGVFAPR PSTGPHKLRE SLPLLIFLRN RLKYALNGAE  60
   61 VTKIVMQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.620	N/A	N/A	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.594	N/A	N/A	a.64.1	Saposin
View	Download	0.587	N/A	N/A	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.581	N/A	N/A	a.64.1	Saposin
View	Download	0.532	N/A	N/A	a.4.15	Description not found.
View	Download	0.520	N/A	N/A	a.64.1	Saposin
View	Download	0.518	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.509	N/A	N/A	a.64.1	Saposin
View	Download	0.480	N/A	N/A	d.95.1	Glucose permease domain IIB
View	Download	0.429	N/A	N/A	a.28.1	ACP-like

Predicted Domain #2

Region A:
Residues: [68-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLVKVDGKVR TDPTYPAGYM DVITLEKTGE FFRLVYDVKG RFVIHRISAE EAKYKLCKVK  60
   61 KTQLGAKGVP FLVTHDGRTI RYPDPLIHAN DSVQVDIASG KITDYIKFDS GNLCMITGG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.408935
Match:	PF00900.11
Description:	No description for PF00900.11 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.861	N/A	N/A	b.61.7	Description not found.
View	Download	0.832	N/A	N/A	b.61.7	Description not found.
View	Download	0.828	N/A	N/A	b.61.7	Description not found.
View	Download	0.812	N/A	N/A	b.61.7	Description not found.
View	Download	0.804	N/A	N/A	b.61.7	Description not found.
View	Download	0.787	N/A	N/A	b.55.1	PH domain-like
View	Download	0.751	N/A	N/A	c.3.1	FAD/NAD(P)-binding domain
View	Download	0.709	N/A	N/A	d.131.1	DNA clamp
View	Download	0.705	N/A	N/A	b.60.1	Lipocalins
View	Download	0.694	N/A	N/A	c.3.1	FAD/NAD(P)-binding domain

Predicted Domain #3

Region A:
Residues: [187-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNLGRVGTVV NRERHPGSFD IVHIKDSQGH VFATRLTNVF IIGKGNKPYI SLPKGKGVKL  60
   61 SIAEERDKRL AAKTH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.740	N/A	N/A	d.223.1	Polo domain
View	Download	0.701	N/A	N/A	d.223.1	Polo domain
View	Download	0.606	N/A	N/A	d.223.1	Polo domain
View	Download	0.518	N/A	N/A	d.129.1	TATA-box binding protein-like
View	Download	0.494	N/A	N/A	d.129.1	TATA-box binding protein-like
View	Download	0.494	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.494	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.493	N/A	N/A	d.129.1	TATA-box binding protein-like
View	Download	0.457	N/A	N/A	d.129.1	TATA-box binding protein-like
View	Download	0.438	N/A	N/A	d.82.2	Frataxin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits