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View Structure Prediction Details

Protein: vsg-PC, vsg-PD
Organism: Drosophila melanogaster
Length: 183 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vsg-PC, vsg-PD.

Description E-value Query
Range
Subject
Range
gi|3511287, gi|7... - pir||T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...
104.0 [0..2] [167..1506]
gi|73955449 - gi|73955449|ref|XP_858007.1| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...
104.0 [0..19] [154..1706]
gi|76635636 - gi|76635636|ref|XP_881215.1| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...
99.0 [0..43] [154..1694]
gi|83767526, gi|... - gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [Aspergillus oryzae], gi|83767526|dbj|B...
gi|169770395 - gi|169770395|ref|XP_001819667.1| hypothetical protein [Aspergillus oryzae RIB40]
100.0 [0..13] [145..1608]

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Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRQAKFLIL CLFVGLFSAN LCEEAVTTPA PADTTTQESK NTTTPPDTTT TVTPPSTSTT  60
   61 STTTEKTTTT PPITTSTEKT TTSTTPASTT SSTTPASTTS STTPATTTTT PGTTSTTTPS 120
  121 PNSTTTTPPP HTSTTPAPKP VPCGHFDGSS FIGGIVLTLG LLAIGLVAYK FYKARNERNY 180
  181 HTL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.42
Match: 2j63A
Description: No description for 2j63A was found.

YRC Informatics Platform - Version 3.0
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