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View Structure Prediction Details

Protein: CG3448-PB
Organism: Drosophila melanogaster
Length: 235 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG3448-PB.

Description E-value Query
Range
Subject
Range
gi|125977152, gi... - gi|54641357|gb|EAL30107.1| GA17458 [Drosophila pseudoobscura pseudoobscura], gi|125977152|ref|XP_001...
gi|54641357|gb|E... - GA17458-PA [Drosophila pseudoobscura], GA17458 [Drosophila pseudoobscura pseudoobscura]
300.0 [0..1] [234..1]

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Predicted Domain #1
Region A:
Residues: [1-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFVVKLLQ RSQLSHSQID VKPFIYVRSK WMDDDVEFDI LTTSDNQNYR SIVKYDEFRS  60
   61 GASELEQAYD AFFAECKSAV TTHMGLQGFD YEISMEDVEK PAFKVYKCEG YETLYLDVPL 120
  121 RKVSNCYQML DAAIEAGQQK PQAAPATESD AQTTASLAEY EKYVRDSKLK EEELLKKFLL 180
  181 LLNSKKAHIR DLESQLEKRS GKVSRAKNNQ RIFSDDEDDA YGAATQVMNI DNDSD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 5.23
Match: 1ik9A
Description: XRCC4, N-terminal domain; XRCC4, C-terminal oligomerization domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.00251165791477199 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle