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View Structure Prediction Details

Protein: Cp19-PA
Organism: Drosophila melanogaster
Length: 173 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cp19-PA.

Description E-value Query
Range
Subject
Range
CH19_DROSU - Chorion protein S19 OS=Drosophila subobscura GN=Cp19 PE=3 SV=1
198.0 [0..1] [171..1]
CH19_DROGR - Chorion protein S19 OS=Drosophila grimshawi GN=Cp19 PE=3 SV=1
185.0 [0..1] [163..1]
gi|228034 - gi|228034|prf||1715318C chorion protein s19
183.0 [0..1] [159..1]
CH19_DROVI - Chorion protein S19 OS=Drosophila virilis GN=Cp19 PE=3 SV=1
164.0 [0..1] [169..1]
gi|54641847, gi|... - gi|54641847|gb|EAL30597.1| GA19663-PA [Drosophila pseudoobscura], gi|125978126|ref|XP_001353096.1| G...
160.0 [0..6] [171..1]
gi|3135761 - gi|3135761|emb|CAA70118.1| s19 chorion protein [Ceratitis capitata]
56.0 [0..106] [155..252]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFATLAVI FCACIVGSCY ANYGGQQSYG QRSYGQDSSA ASAASSAAAA GAEGQQRYER  60
   61 PVEIIAGGYR GSYAPEILRP IQVSGGYGGE R

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGYNGGNYRR AGYGPRWTVQ PAGATLLYPG QNNYKAYVSP PEYSKVILPI RPAAPVAKLF  60
   61 VPENQYGNQY VSQYSAPRSS GY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 45.408935
Match: PF06756.2
Description: No description for PF06756.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle