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View Structure Prediction Details

Protein: Cp15-PA
Organism: Drosophila melanogaster
Length: 115 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cp15-PA.

Description E-value Query
Range
Subject
Range
gi|54641848|gb|E... - GA19658-PA [Drosophila pseudoobscura], GA19658 [Drosophila pseudoobscura pseudoobscura]
gi|54641848, gi|... - gi|54641848|gb|EAL30598.1| GA19658 [Drosophila pseudoobscura pseudoobscura], gi|125978128|ref|XP_001...
73.0 [0..1] [111..1]
CH15_DROSU - Chorion protein S15 OS=Drosophila subobscura GN=Cp15 PE=3 SV=1
72.0 [0..1] [101..1]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYLIVCVTL ALFAYINASP AYGNRGGYGG GYGGGYGPVQ RVVYEEVPAY GPSRGYNSYP  60
   61 RSLRSEGNGG SAAAAAAASA AAVNPGTYKQ YAIPSYELDG ARGYEIGHGY GQRAY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 47.309804
Match: PF03964.6
Description: No description for PF03964.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.660 N/A N/A a.28.1 ACP-like
View Download 0.656 N/A N/A a.28.1 ACP-like
View Download 0.318 N/A N/A a.74.1 Cyclin-like
View Download 0.290 N/A N/A a.29.2 Bromodomain
View Download 0.275 N/A N/A d.58.7 RNA-binding domain, RBD


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle