YRC Public Data Repository - Protein Structure Prediction

Protein:	CG7188-PA
Organism:	Drosophila melanogaster
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG7188-PA.

Description	E-value	Query Range	Subject Range
gi\|73974854 - gi\|73974854\|ref\|XP_532348.2\| PREDICTED: similar to glutamate receptor, ionotropic, N-methyl D-aspara...	189.0	[0..5]	[233..261]
gi\|60477740 - gi\|60477740\|gb\|AAH41788.2\| Glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1...	187.0	[0..5]	[233..140]
gi\|109087974, gi... - gi\|109087976\|ref\|XP_001098441.1\| PREDICTED: similar to glutamate receptor, ionotropic, N-methyl D-as...	186.0	[0..5]	[233..140]
gi\|114622146 - gi\|114622146\|ref\|XP_520009.2\| PREDICTED: similar to Glutamate receptor, ionotropic, N-methyl D-aspar...	184.0	[0..5]	[233..140]
gi\|157128927, gi... - gi\|157128927\|ref\|XP_001661552.1\| nmda receptor glutamate-binding chain [Aedes aegypti], gi\|108872427...	177.0	[0..5]	[233..83]
gi\|147904118, gi... - gi\|27503256\|gb\|AAH42223.1\| Grina-prov protein [Xenopus laevis], gi\|147904118\|ref\|NP_001080331.1\| NMD...	177.0	[0..23]	[233..161]
gi\|228226 - gi\|228226\|prf\|\|1718347A NMDA receptor:SUBUNIT=Glu-binding gi\|112064 - pir\|\|S19586 N-methyl-D-aspartate receptor glutamate-binding chain - rat	176.0	[0..5]	[233..115]
gi\|23463297, gi\|... - gi\|94400811\|ref\|NP_695220.3\| glutamate receptor, ionotropic, N-methyl D-asparate-associated protein ... gi\|8248741 - gi\|8248741\|gb\|AAB20211.2\| NMDA receptor glutamate-binding subunit [Rattus sp.]	175.0	[0..5]	[233..115]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTANYIND RFQTFMNGLG DRYEPYVREH LSKVYMVLGS TAAATAMGAM LQMRDFLDLG  60
   61 VLAAVATLVL VLGLHFYKDD GKNYYTRLGM LYAFGFCSGQ TLGPLLGYIC SINPAIILSA 120
  121 LTGTFVTFIS LSLSALLAEQ GKYLYLGGML VSVINTMALL SLFNMVFKSY FVQVTQLYVG 180
  181 VFVMAAFIVY DTQNIVEKCR NGNRDVVQHA LDLFFDVLSM FRRLLIILTQ KEERKQNERR 240
  241 QNKTK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits