YRC Public Data Repository - Protein Structure Prediction

Protein:	CG7550-PA
Organism:	Drosophila melanogaster
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG7550-PA.

Description	E-value	Query Range	Subject Range
gi\|25402861, gi\|... - gi\|6714305\|gb\|AAF26001.1\|AC013354_20 F15H18.4 [Arabidopsis thaliana], pir\|\|E86318 protein F15H18.4 [...	279.0	[0..2]	[208..1452]
gi\|54642568, gi\|... - gi\|54642568\|gb\|EAL31315.1\| GA20432 [Drosophila pseudoobscura pseudoobscura], gi\|125980476\|ref\|XP_001... gi\|54642568\|gb\|E... - GA20432-PA [Drosophila pseudoobscura], GA20432 [Drosophila pseudoobscura pseudoobscura]	270.0	[0..1]	[240..1]
gi\|27675962, gi\|... - ref\|XP_228117.1\| similar to hypothetical protein FLJ14547 [Rattus norvegicus], gi\|157821567\|ref\|NP_0...	266.0	[0..1]	[212..6]
CJ22_MOUSE - (Q6PDY2) Protein C10orf22 homolog	263.0	[0..1]	[212..1]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTHFSNVLR QAFKTFDRAN HASFNANLQH LRQLTDELTY RDLHLREELF RNVGSHRAPC  60
   61 SYMHIFEDDR FSMSLFIVRG ASTIPLHDHP MMFGLLRCIW GQLMVDSFSH QLGPDEPLTY 120
  121 DPHQTVVKVN VEEPKLVTPA SPCATLTPRK RNYHQIAQIG SGVAAFFDIL SPPYDADMPT 180
  181 YGPRQCRFYR ATAEGSQVQL HCIPSPDTYY CDVVDTPESV MQAAFQCADE VYADNASGTQ 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.34
Match:	2ic1A
Description:	No description for 2ic1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits