YRC Public Data Repository - Protein Structure Prediction

Protein:	CG8038-PA
Organism:	Drosophila melanogaster
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8038-PA.

Description	E-value	Query Range	Subject Range
gi\|125976956, gi... - gi\|54641258\|gb\|EAL30008.1\| GA20782-PA [Drosophila pseudoobscura], gi\|125976956\|ref\|XP_001352511.1\| G...	223.0	[0..8]	[206..1]
gi\|73948573 - gi\|73948573\|ref\|XP_855541.1\| PREDICTED: similar to Ribonuclease P protein subunit p29 (hPOP4) [Canis...	216.0	[0..2]	[200..112]
RPP29_MOUSE - Ribonuclease P protein subunit p29 OS=Mus musculus GN=Pop4 PE=2 SV=1	211.0	[0..2]	[200..25]
gi\|114676456 - gi\|114676456\|ref\|XP_001149225.1\| PREDICTED: similar to Pop4 protein isoform 5 [Pan troglodytes]	210.0	[0..2]	[200..54]
RPP29_RAT - Ribonuclease P protein subunit p29 OS=Rattus norvegicus GN=Pop4 PE=2 SV=1	206.0	[0..2]	[200..25]
RP29_PONPY, RPP2... - Ribonuclease P protein subunit p29 - Pongo pygmaeus (Orangutan), (Q5R7B0) Ribonuclease P protein sub... RPP29_PONAB - Ribonuclease P protein subunit p29 OS=Pongo abelii GN=POP4 PE=2 SV=1	204.0	[0..2]	[200..25]
gi\|123992762, gi... - gi\|123999500\|gb\|ABM87306.1\| processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) [s... POP4 - processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)	203.0	[0..2]	[200..25]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHATSELRE FISDLVIPHQ RCNVNINPDH ITMLEGTKIK KQHSRKRRAH KSSTLSRREY  60
   61 AALGLNTLPT KQMKYEEALP LHHLWKGYVR EHLELREGDE VPQVHDARYD EFSRKLVKLD 120
  121 LH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [123-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAKMKVLQSK CSTLENLAGI CVMDTKNVLK LLGKDHRLRT IPKSECVFGM KVGNMEFTIF  60
   61 GQHLNIRPAE RSVKKIKNFV KPFM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1v76A
Description:	Crystal Structure of Archaeal Ribonuclease P Protein Ph1771p from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits