YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0303093, CG8...
Organism:	Drosophila melanogaster
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0303093, CG8....

Description	E-value	Query Range	Subject Range
gi\|48129273 - gi\|48129273\|ref\|XP_396646.1\| PREDICTED: similar to Shwachman-Bodian-Diamond syndrome protein [Apis m...	339.0	[0..2]	[252..5]
gi\|55237824, gi\|... - gi\|58390269\|ref\|XP_317609.2\| ENSANGP00000009959 [Anopheles gambiae str. PEST], gi\|55237824\|gb\|EAA127...	328.0	[0..1]	[252..1]
gi\|47221046 - gi\|47221046\|emb\|CAG12740.1\| unnamed protein product [Tetraodon nigroviridis]	328.0	[0..4]	[252..3]
gi\|20151319 - gi\|20151319\|gb\|AAM11019.1\| GH01786p [Drosophila melanogaster]	327.0	[0..1]	[252..1]
gi\|157113875, gi... - gi\|157113875\|ref\|XP_001652129.1\| hypothetical protein AaeL_AAEL006625 [Aedes aegypti], gi\|108877567\|...	326.0	[0..1]	[252..1]
gi\|39586134, gi\|... - gi\|39586134\|emb\|CAE69210.1\| Hypothetical protein CBG15250 [Caenorhabditis briggsae], gi\|187027296\|em... gi\|157776810 - gi\|157776810\|ref\|XP_001666471.1\| hypothetical protein CBG15250 [Caenorhabditis briggsae AF16]	325.0	[0..1]	[249..1]
sbds-1 - status:Confirmed UniProt:Q23202 protein_id:AAK29863.2	323.0	[0..1]	[249..1]
SBDS_RAT - Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1	322.0	[0..4]	[252..3]
SBDS_MOUSE - Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=1 SV=4	322.0	[0..4]	[252..3]

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Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIFTPTNQ IRLTNVAIVR LKKGGKRFEI ACYKNKVLSW RSNSEKDIDE VLQTHTVFTN  60
   61 VSKGQAAKKD ELQKAFNKTD ETEICKEILS KGELQVSEKE RQSCLDTQLN SIVNSVAALC 120
  121 VNPETRRPYP ASIIEKSLKD AHFSVKMNRN TKQNTLEAIK ILKDHMPIER SRMKLRVSFA 180
  181 GKEGGGKLKE SVVKLANAVE HEEWDEATLH LTLLIDPGQY RVIDELVRNE TKGKGLLELL 240
  241 ELKEVVESEE LF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.154902
Match:	1p9qC
Description:	Structure of a hypothetical protein AF0491 from Archaeoglobus fulgidus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits