YRC Public Data Repository - Protein Structure Prediction

Protein:	Lcp65Ag1-PA, Lcp...
Organism:	Drosophila melanogaster
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Lcp65Ag1-PA, Lcp....

Description	E-value	Query Range	Subject Range
Lcp65Ac-PA - The gene Lcp65Ac is referred to in FlyBase by the symbol Dmel\Lcp65Ac (CG6956, FBgn0020642). It is a... gi\|220957526 - gi\|220957526\|gb\|ACL91306.1\| Lcp65Ac-PA [synthetic construct]	129.0	[0..1]	[103..1]
gi\|119114027, gi... - gi\|119114027\|ref\|XP_318997.3\| ENSANGP00000014755 [Anopheles gambiae str. PEST], gi\|116118219\|gb\|EAA1...	127.0	[0..21]	[104..123]
gi\|91083447 - gi\|91083447\|ref\|XP_970381.1\| PREDICTED: similar to cuticle protein 1 [Tribolium castaneum]	126.0	[0..1]	[103..1]
gi\|125808726, gi... - gi\|54636022\|gb\|EAL25425.1\| GA15602-PA [Drosophila pseudoobscura], gi\|125808726\|ref\|XP_001360850.1\| G...	124.0	[0..3]	[99..60]
gi\|108881215, gi... - gi\|157135292\|ref\|XP_001656586.1\| pupal cuticle protein 78E, putative [Aedes aegypti], gi\|108881215\|g...	124.0	[0..1]	[99..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLIVFVAL FAVALAAPAA EEPTIVRSES DVGPESFKYD WETSDGQAAQ AVGQLNDIGT  60
   61 ENEAISVSGS YRFIADDGQT YQVNYIADKN GFQPQGAHLP VAPVA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	30.017729
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.930	N/A	N/A	d.17.2	Copper amine oxidase, domains 1 and 2

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits