YRC Public Data Repository - Protein Structure Prediction

Protein:	Txl-PA
Organism:	Drosophila melanogaster
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Txl-PA.

Description	E-value	Query Range	Subject Range
gi\|125979663\|ref... - GA18927-PA [Drosophila pseudoobscura], GA18927 [Drosophila pseudoobscura pseudoobscura] gi\|54640848, gi\|... - gi\|54640848\|gb\|EAL29599.1\| GA18927 [Drosophila pseudoobscura pseudoobscura], gi\|125979663\|ref\|XP_001... gi\|194115482, gi... - gi\|195174072\|ref\|XP_002027806.1\| GL16306 [Drosophila persimilis], gi\|194115482\|gb\|EDW37525.1\| GL1630...	290.0	[0..1]	[287..1]
gi\|7672773 - gi\|7672773\|gb\|AAF66635.1\|AF143404_1 thioredoxin-like protein TXL [Drosophila melanogaster]	288.0	[0..1]	[287..1]
gi\|108875726, gi... - gi\|157118424\|ref\|XP_001659108.1\| hypothetical protein AaeL_AAEL008291 [Aedes aegypti], gi\|108875726\|...	277.0	[0..1]	[287..1]
AGAP005462-PA - \|protein_coding\|2L:15814852:15815851:1\|gene:AGAP005462 gi\|55238272, gi\|... - gi\|58387309\|ref\|XP_315465.2\| AGAP005462-PA [Anopheles gambiae str. PEST], gi\|55238272\|gb\|EAA11972.3\|...	275.0	[0..1]	[287..1]
gi\|91085787 - gi\|91085787\|ref\|XP_974503.1\| PREDICTED: similar to thioredoxin-like protein [Tribolium castaneum]	264.0	[0..1]	[287..1]
gi\|115745082, gi... - gi\|72087185\|ref\|XP_786407.1\| PREDICTED: similar to GA18927-PA [Strongylocentrotus purpuratus], gi\|11...	263.0	[0..2]	[287..3]
gi\|95102586, gi\|... - gi\|95102586\|gb\|ABF51231.1\| thioredoxin [Bombyx mori], gi\|114052058\|ref\|NP_001040348.1\| thioredoxin [...	263.0	[0..4]	[287..5]
gi\|73666437, gi\|... - gi\|73666441\|gb\|AAZ79897.1\| thioredoxin-like protein [Bombus ignitus], gi\|73666437\|gb\|AAZ79895.1\| thi...	259.0	[0..2]	[287..3]
gi\|66524108 - gi\|66524108\|ref\|XP_623128.1\| PREDICTED: similar to Thioredoxin-like CG5495-PA isoform 1 [Apis mellif...	258.0	[0..2]	[287..3]
gi\|182891510, gi... - gi\|41053764\|ref\|NP_957432.1\| thioredoxin-like 1 [Danio rerio], gi\|28278840\|gb\|AAH45322.1\| Thioredoxi...	254.0	[0..3]	[287..4]

Back

Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVRVINDES HFQAELAQAG IQLVVVDFTA SWCGPCKRIA PIFETFPTKY PKAIFLKVDV  60
   61 DKCQDTAAGQ GVSAMPTFIF YRNRTKIDRV QGADVNGLEA KIQEHIGTS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	2j23A
Description:	No description for 2j23A was found.

Predicted Domain #2

Region A:
Residues: [110-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGEEGGEDYG QGLMELNTFI SKQECECLNE ADDHNLKHAL ASAGGYLQSD CDEQLILSIT  60
   61 FNQAVKIHSL KFKAPSHLGP KDVKLFINQP RTIDFDMAES MNSVQDLSLA QKEL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	6.12
Match:	1wwyA
Description:	Solution structure of the DUF1000 domain of a thioredoxin-like protein 1
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [224-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESGVPVNLRY VKFQNVQNIQ IFVKNNQSGG DVTQIDYIGF IGSPIMTTKM NDFKRVAGKK  60
   61 GESH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1wwyA
Description:	Solution structure of the DUF1000 domain of a thioredoxin-like protein 1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits