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View Structure Prediction Details

Protein: CG12079-PA
Organism: Drosophila melanogaster
Length: 265 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG12079-PA.

Description E-value Query
Range
Subject
Range
NDUS3_MOUSE - NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Mus musculus GN=Ndufs3 PE=1 ...
360.0 [0..13] [265..10]
gi|125977414|ref... - GA11380-PA [Drosophila pseudoobscura], GA11380 [Drosophila pseudoobscura pseudoobscura]
gi|125977414, gi... - gi|54641490|gb|EAL30240.1| GA11380 [Drosophila pseudoobscura pseudoobscura], gi|125977414|ref|XP_001...
353.0 [0..1] [265..1]
NDUS3_PONAB - NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Pongo abelii GN=NDUFS3 PE=2 ...
NDUS3_PONPY - NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Pongo pygmaeus GN=NDUFS3 PE=...
351.0 [0..14] [265..11]
gi|109106401 - gi|109106401|ref|XP_001105264.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein ...
351.0 [0..14] [265..12]
NDUS3_GORGO - NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Gorilla gorilla gorilla GN=N...
gi|111661910 - gi|111661910|gb|ABH12176.1| mitochondrial complex I subunit NDUFS3 [Gorilla gorilla]
351.0 [0..14] [265..11]
gi|123982062, gi... - gi|123996891|gb|ABM86047.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q r...
NDUFS3 - NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase)
350.0 [0..14] [265..12]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALIRNLGA RAAVAALSAK HVVPAAGSTA LRMASTTPVE PKKADKPTVR QPDAVARSHL  60
   61 SDFGRYVAEC LPKYVQKVQL TA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDELEVLIAP EGVVPVLQFL KDHHQAQFTN LVDIAGVDVP CRKNRFEVVY NLLSLRYNSR  60
   61 IRVKTYTDEL TPLDSACEVH KAANWYEREI WDMYGVFFAN HPDLRRILTD YGFEGHPQRR 120
  121 DFPLSGYVEL RYDDEKKRVV CEPLELAQEF RKFDLSAPWE QFPNFRNANP PAEVVPPQAP 180
  181 AKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.0
Match: 2fug5
Description: Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle