YRC Public Data Repository - Protein Structure Prediction

Protein:	CG8993-PA
Organism:	Drosophila melanogaster
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8993-PA.

Description	E-value	Query Range	Subject Range
gi\|95928472, gi\|... - gi\|95928472\|ref\|ZP_01311219.1\| thioredoxin [Desulfuromonas acetoxidans DSM 684], gi\|95135262\|gb\|EAT1...	140.0	[0..30]	[138..1]
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	137.0	[0..15]	[138..23]
gi\|148654106, gi... - gi\|91770948\|ref\|ZP_01272767.1\| Thioredoxin [Psychrobacter sp. PRwf-1], gi\|91719962\|gb\|EAS85892.1\| Th...	136.0	[0..32]	[138..2]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	136.0	[0..16]	[138..24]
gi\|85711916, gi\|... - gi\|85711916\|ref\|ZP_01042971.1\| Thioredoxin [Idiomarina baltica OS145], gi\|85694313\|gb\|EAQ32256.1\| Th...	135.0	[0..32]	[138..2]
gi\|83757761, gi\|... - gi\|83816367\|ref\|YP_446755.1\| thioredoxin [Salinibacter ruber DSM 13855], gi\|83757761\|gb\|ABC45874.1\| ...	134.0	[0..31]	[140..3]
gi\|575449 - gi\|575449\|gb\|AAA67270.1\| Derived from E. coli thioredoxin gene; normal translation termination codon...	134.0	[0..32]	[141..2]
gi\|25067747 - gi\|25067747\|gb\|AAN65341.1\| thioredoxin/transketolase fusion protein [synthetic construct]	133.0	[0..32]	[138..2]
gi\|116057647 - gi\|116057647\|emb\|CAL53850.1\| Thioredoxin (ISS) [Ostreococcus tauri]	133.0	[0..31]	[138..109]
gi\|77546741, gi\|... - gi\|77920658\|ref\|YP_358473.1\| thioredoxin [Pelobacter carbinolicus DSM 2380], gi\|77546741\|gb\|ABA90303...	133.0	[0..30]	[138..1]

Back

Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRQIINILG QTTRRLASGQ QIRMLSVSAP RQEIFKVQSA EDFDKKVKNS QQPVIVDFFA  60
   61 TWCNPCKLLT PRIESIVGEQ AGSIKLAKVD IDEHSELALD YDVAAVPVLV VLQNGKEVQR 120
  121 MVGLQDEDKI RAWVAAAVKQ AK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	1uvzA
Description:	structure of human thioredoxin 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits