YRC Public Data Repository - Protein Structure Prediction

Protein:	Kaz1-ORFB-PC
Organism:	Drosophila melanogaster
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Kaz1-ORFB-PC.

Description	E-value	Query Range	Subject Range
gi\|220949932 - gi\|220949932\|gb\|ACL87509.1\| Kaz1-ORFB-PA [synthetic construct] Kaz1-ORFB-PF, Ka... - The gene Kaz1-ORFB is referred to in FlyBase by the symbol Dmel\Kaz1-ORFB (CG1220, FBgn0063923). It ...	200.0	[0..1]	[97..18]
gi\|54641249, gi\|... - gi\|54641249\|gb\|EAL29999.1\| GA17247-PA [Drosophila pseudoobscura], gi\|125976938\|ref\|XP_001352502.1\| G...	78.0	[0..5]	[86..16]
gi\|118779002, gi... - gi\|118779002\|ref\|XP_565460.2\| AGAP006738-PA [Anopheles gambiae str. PEST], gi\|116132651\|gb\|EAL41967.... AGAP006738-PA - \|protein_coding\|2L:37626060:37631679:1\|gene:AGAP006738	64.0	[0..16]	[95..85]
gi\|114053193, gi... - gi\|87248661\|gb\|ABD36383.1\| protease inhibitor 1 [Bombyx mori], gi\|114053193\|ref\|NP_001040294.1\| prot...	62.0	[0..41]	[97..85]
gi\|66524954 - gi\|66524954\|ref\|XP_624838.1\| PREDICTED: similar to CG1220-PE, isoform E [Apis mellifera]	62.0	[0..44]	[97..72]
gi\|56462282 - gi\|56462282\|gb\|AAV91424.1\| protease inhibitor 1 [Lonomia obliqua]	59.0	[0..49]	[95..101]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQCYPQFDS ENPWLRPRQP TEPTISPNAG GSTPANAAPP TTQSPRYFAC FHSCPATSEY  60
   61 NPICGSDNVN YYNENKFNCA LNCGLNIRKV HKGICQT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.57
Match:	1pceA
Description:	SOLUTION STRUCTURE AND DYNAMICS OF PEC-60, A PROTEIN OF THE KAZAL TYPE INHIBITOR FAMILY, DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits