YRC Public Data Repository - Protein Structure Prediction

Protein:	Tina-1-PA
Organism:	Drosophila melanogaster
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Tina-1-PA.

Description	E-value	Query Range	Subject Range
gi\|125807093, gi... - gi\|54635435\|gb\|EAL24838.1\| GA15466-PA [Drosophila pseudoobscura], gi\|125807093\|ref\|XP_001360263.1\| G...	182.0	[0..6]	[167..2]
gi\|58381672, gi\|... - gi\|58381672\|ref\|XP_311399.2\| ENSANGP00000016842 [Anopheles gambiae str. PEST], gi\|55242888\|gb\|EAA070...	166.0	[0..6]	[148..1]
gi\|13279332 - gi\|13279332\|gb\|AAH04360.1\| A2LD1 protein [Homo sapiens]	163.0	[0..3]	[151..56]
gi\|49259570 - gi\|49259570\|pdb\|1VKB\|A Chain A, Crystal Structure Of A Protein With Unknown Function From Upf0131 Fa...	162.0	[0..11]	[151..13]
gi\|220948806 - gi\|220948806\|gb\|ACL86946.1\| CG2811-PA [synthetic construct] CG2811-PA - This gene is referred to in FlyBase by the symbol Dmel\CG2811 (CG2811, FBgn0035082). It is a protein...	161.0	[0..4]	[163..2]
GGACT_RAT - Gamma-glutamylaminecyclotransferase OS=Rattus norvegicus GN=Ggact PE=2 SV=1	160.0	[0..11]	[151..1]
GGACT_BOVIN - Gamma-glutamylaminecyclotransferase OS=Bos taurus GN=GGACT PE=2 SV=1	153.0	[0..7]	[151..22]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQAKKVSSA LSKLFVYGAL KYGQPSNSIL ASSGNGFAKF WCKATTTQKL PLVIATRYNI  60
   61 PFLLNKPGVG YYVTGEIYEV DDRMLNSLDN LEDCEEIYTR EMHDMNIGVG EGTVPCWVYL 120
  121 LQKYPENLLS LRYLSSYENS TTHPYIMRHR RTHKHPAQDD LTYEAQN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.39794
Match:	1vkbA
Description:	Crystal structure of hypothetical protein from Mus musculus at 1.90 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits