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View Structure Prediction Details

Protein: Lcp9-PA
Organism: Drosophila melanogaster
Length: 92 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Lcp9-PA.

Description E-value Query
Range
Subject
Range
Lcp65Ac-PA - The gene Lcp65Ac is referred to in FlyBase by the symbol Dmel\Lcp65Ac (CG6956, FBgn0020642). It is a...
gi|220957526 - gi|220957526|gb|ACL91306.1| Lcp65Ac-PA [synthetic construct]
108.0 [0..3] [89..9]
gi|119114023, gi... - gi|119114023|ref|XP_318995.3| ENSANGP00000014836 [Anopheles gambiae str. PEST], gi|116118217|gb|EAA1...
106.0 [0..5] [89..7]
gi|108881215, gi... - gi|157135292|ref|XP_001656586.1| pupal cuticle protein 78E, putative [Aedes aegypti], gi|108881215|g...
105.0 [0..1] [89..1]
gi|125808726, gi... - gi|54636022|gb|EAL25425.1| GA15602-PA [Drosophila pseudoobscura], gi|125808726|ref|XP_001360850.1| G...
104.0 [0..3] [89..60]
gi|66564779 - gi|66564779|ref|XP_624729.1| PREDICTED: similar to CG1259-PB [Apis mellifera]
104.0 [0..9] [91..200]

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Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFVIVLACL LAVVFANEEA DVVKSDSEVN LLDFNYAYEL SNHIRAVQTG ALKEHDNWVV  60
   61 SGEYEYVAPN GKTVKVVYTA DETGYHPKVV EA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 19.259637
Match: PF00379.14
Description: No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.906 N/A N/A d.17.2 Copper amine oxidase, domains 1 and 2


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle