YRC Public Data Repository - Protein Structure Prediction

Protein:	DnaJ-60-PC, DnaJ...
Organism:	Drosophila melanogaster
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DnaJ-60-PC, DnaJ....

Description	E-value	Query Range	Subject Range
gi\|30421320 - gi\|30421320\|gb\|AAP31273.1\| DNAJ-1 [Drosophila yakuba]	166.0	[0..25]	[214..3]
gi\|30421318 - gi\|30421318\|gb\|AAP31272.1\| DNAJ-1 [Drosophila teissieri]	163.0	[0..25]	[214..3]
gi\|124530383, gi... - gi\|124530383\|ref\|ZP_01701069.1\| chaperone protein DnaJ [Escherichia coli B], gi\|124499274\|gb\|EAY4676... gi\|110640228, gi... - gi\|110640228\|ref\|YP_667956.1\| chaperone protein DnaJ [Escherichia coli 536], gi\|110341820\|gb\|ABG6805...	160.0	[0..13]	[169..2]
gi\|117622308, gi... - gi\|117622308\|ref\|YP_851221.1\| chaperone protein DnaJ [Escherichia coli APEC O1], gi\|115511432\|gb\|ABI... gi\|226902067, gi... - gi\|237704155\|ref\|ZP_04534636.1\| chaperone with DnaK [Escherichia sp. 3_2_53FAA], gi\|226902067\|gb\|EEH...	159.0	[0..13]	[169..2]
DNAJ_SALCH - Chaperone protein DnaJ OS=Salmonella choleraesuis GN=dnaJ PE=3 SV=3 DNAJ_SALTY - Chaperone protein DnaJ OS=Salmonella typhimurium GN=dnaJ PE=2 SV=2 DNAJ_SALPB - Chaperone protein dnaJ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dnaJ PE=3 SV=1 gi\|168234750, gi... - gi\|197292013\|gb\|EDY31363.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar Schw... gi\|205335216, gi... - gi\|205335216\|gb\|EDZ21980.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar Kent... gi\|205331430, gi... - gi\|205331430\|gb\|EDZ18194.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar 4,[5... gi\|167552158, gi... - gi\|205323117\|gb\|EDZ10956.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar Sain... lcl\|NC_016856.1_... - [gene=dnaJ] [protein=chaperone protein DnaJ] [protein_id=YP_005235647.1] [location=13595..14734] DNAJ_SALTI - Chaperone protein DnaJ OS=Salmonella typhi GN=dnaJ PE=3 SV=2 DNAJ_SALTY - Chaperone protein DnaJ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dnaJ PE=3 ... DNAJ_SALTI - Chaperone protein dnaJ OS=Salmonella typhi GN=dnaJ PE=2 SV=2 DNAJ_SALTY - Chaperone protein dnaJ OS=Salmonella typhimurium GN=dnaJ PE=2 SV=2 gi\|200386746, gi... - gi\|200386746\|ref\|ZP_03213358.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar ... DNAJ_SALDC - Chaperone protein DnaJ OS=Salmonella dublin (strain CT_02021853) GN=dnaJ PE=3 SV=1 gi\|238910770 - gi\|238910770\|ref\|ZP_04654607.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar ... gi\|197261782, gi... - gi\|197261782\|ref\|ZP_03161856.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar ... DNAJ_SALA4 - Chaperone protein DnaJ OS=Salmonella agona (strain SL483) GN=dnaJ PE=3 SV=1 gi\|213052055 - gi\|213052055\|ref\|ZP_03344933.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar ... DNAJ_SALEP - Chaperone protein DnaJ OS=Salmonella enteritidis PT4 (strain P125109) GN=dnaJ PE=3 SV=1 DNAJ_SALG2 - Chaperone protein DnaJ OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=dnaJ PE=3 SV=1 gi\|204927085, gi... - gi\|204927085\|ref\|ZP_03218287.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar ... gi\|168822157, gi... - gi\|205341422\|gb\|EDZ28186.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar Welt... gi\|168464463, gi... - gi\|195633028\|gb\|EDX51482.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar Newp... gi\|205348796, gi... - gi\|205348796\|gb\|EDZ35427.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar Hada... gi\|168244484, gi... - gi\|205336608\|gb\|EDZ23372.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar Heid... DNAJ_SALSV - Chaperone protein DnaJ OS=Salmonella schwarzengrund (strain CVM19633) GN=dnaJ PE=3 SV=1 gi\|194455583, gi... - gi\|194469219\|ref\|ZP_03075203.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar ... DNAJ_SALHS - Chaperone protein DnaJ OS=Salmonella heidelberg (strain SL476) GN=dnaJ PE=3 SV=1 DNAJ_SALNS - Chaperone protein DnaJ OS=Salmonella newport (strain SL254) GN=dnaJ PE=3 SV=1 gi\|213864898 - gi\|213864898\|ref\|ZP_03387017.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar ... gi\|213647263 - gi\|213647263\|ref\|ZP_03377316.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar ... gi\|213616376 - gi\|213616376\|ref\|ZP_03372202.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar ... gi\|213426531 - gi\|213426531\|ref\|ZP_03359281.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar ... DNAJ_SALPC - Chaperone protein DnaJ OS=Salmonella paratyphi C (strain RKS4594) GN=dnaJ PE=3 SV=1 gi\|214001206 - gi\|214001206\|ref\|ZP_03411941.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar ... gi\|29136180, gi\|... - gi\|29140556\|ref\|NP_803898.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar Typ... gi\|16759006 - gi\|16759006\|ref\|NP_454623.1\| chaperone protein DnaJ [Salmonella enterica subsp. enterica serovar Typ... DNAJ_SALPB - Chaperone protein DnaJ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dnaJ PE=3 SV=1 DNAJ_SALCH - Chaperone protein DnaJ OS=Salmonella choleraesuis (strain SC-B67) GN=dnaJ PE=3 SV=3 DNAJ_SALCH - Chaperone protein dnaJ OS=Salmonella choleraesuis GN=dnaJ PE=3 SV=3	159.0	[0..22]	[169..1]
gi\|159121067, gi... - gi\|94493199\|ref\|ZP_01300403.1\| hypothetical protein Rgryl_01001032 [Rickettsiella grylli], gi\|160872...	158.0	[0..23]	[167..3]
gi\|30421324 - gi\|30421324\|gb\|AAP31275.1\| DNAJ-1 [Drosophila sechellia]	158.0	[0..25]	[214..3]
gi\|50762236 - gi\|50762236\|ref\|XP_424983.1\| PREDICTED: similar to DnaJ homolog subfamily B member 5 (Heat shock pro...	157.0	[0..25]	[203..218]
gi\|30421316 - gi\|30421316\|gb\|AAP31271.1\| DNAJ-1 [Drosophila erecta]	157.0	[0..25]	[214..3]
DNAJ_SHIDS - Chaperone protein DnaJ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dnaJ PE=3 SV=1	157.0	[0..22]	[169..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLCLPTRA GYVRNFSNDK PRKPETHYEV LNIRNDCSTR EVRNAFVQLS KLYHPDVKSN  60
   61 AACPERTARF VQISEAYKTL IKPERRRDYD DSLLWQPSRS DRSPVGETVN PGQAWDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	1xblA
Description:	NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [118-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPNYDPNPGP YYGIRGLKRV SNWQVAVVLM ALGFVGALFG FTSVRSSFKL SRQIQDEISA  60
   61 EANSHHAAVV ADAQKYGNEE QVRRMVDRMS RSPFNQSSAK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits