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View Structure Prediction Details

Protein: Chi-PA
Organism: Drosophila melanogaster
Length: 577 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Chi-PA.

Description E-value Query
Range
Subject
Range
gi|3044066 - gi|3044066|gb|AAC13274.1| LIM domain binding protein [Homo sapiens]
gi|109073803 - gi|109073803|ref|XP_001101147.1| PREDICTED: similar to LIM domain binding 2 isoform 1 [Macaca mulatt...
676.0 [0..213] [562..1]

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Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRRGLNAGN TMTSQANIDD GSWKAVSEGG SMLPASNSAV LNPDGSNQSG FAQGGLPYNS  60
   61 AGNPYPPAGQ SSPAGNQSIV FQNSNQPGSN TPQYTSSPAP SGSSTPGPVG AQNIPGNYPQ 120
  121 SATAGNFNGP VGGPFGSPSS GLGQFSRPAS SGTPFNSGQA GHFSSPTVFS VGGQFNPMPP 180
  181 ASPFGHGGNH PMMGGPQQME RIDQGFRRHN SYFSHTEHRV FELNKRLQQR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.69897
Match: 1y0fA
Description: No description for 1y0fA was found.

Predicted Domain #2
Region A:
Residues: [231-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEESDNCWWD SFTTEFFEDD ARLTILFCLE DGPKRYTIGR TLIPRFFRSI YEGGVSDLYF  60
   61 QLKHAKESFH NTSITLDCDQ CTVITQHGKP FFTKVCADAR LILEFMYDDY MRIKSWHMTI 120
  121 KGHRELIPRS VIGTSLPPDP MLLDQITKNI TRAGITNSTL NYLRLCVILE PMQELMSRHK 180
  181 AYALSPRDCL KTTLFQKWQR MVAPPGKKDP QRPPNKRRKR KGSNSGGGNN SNTPPVTNQK 240
  241 RSPSGPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [478-577]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSLSSQDVMV VGEPTLMGGE FGEEDERLIT RLENTQYDGT NAVEHDNHTG FGHADSPISG  60
   61 SNPWSIDRAG AIPASPGNGA APQNNANISD IDKKSPIVSQ 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle