YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: Dcp1-PA, Dcp1-PB
Organism: Drosophila melanogaster
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dcp1-PA, Dcp1-PB.

Description E-value Query
Range
Subject
Range
gi|62732630 - gi|62732630|gb|AAX94785.1| GH04763p [Drosophila melanogaster]
310.0 [0..1] [372..16]

Back

Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADESITRMN LAAIKKIDPY AKEIVDSSSH VAFYTFNSSQ NEWEKTDVEG AFFIYHRNAE  60
   61 PFHSIFINNR L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.522879
Match: 1q67A
Description: Crystal structure of Dcp1p
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [72-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTTSFVEPIT GSLELQSQPP FLLYRNERSR IRGFWFYNSE ECDRISGLVN GLLKSKDQGT  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.69
Match: 1q67A
Description: Crystal structure of Dcp1p
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [132-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGQAQRHVSA PQQPKQDSSQ PASIFNMLTK AQKDYNAQVS GGQPKTPSAE NVTAGNVLKF  60
   61 FESAKQATAE SLFHRVQPLS VDQLEKQQRA ATPGEDLLPP AGRDNHESRL SPFQKMQQLN 120
  121 IQLLSDLKIG KSYATAQSPT VAPSSSALMA NDDAGKCLRR LLAGDKPGPA LMPPTMFDAP 180
  181 NNGNPEPQQP QQPQQPLLNS TQFVQAFTYL IQNDKEFANK LHKAYLNGCS NLLLDSSSTY 240
  241 Q

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle