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View Structure Prediction Details

Protein: ytr-PA, FBpp0309943
Organism: Drosophila melanogaster
Length: 194 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ytr-PA, FBpp0309943.

Description E-value Query
Range
Subject
Range
CAC1B_RABIT - Voltage-dependent N-type calcium channel subunit alpha-1B OS=Oryctolagus cuniculus GN=CACNA1B PE=1 S...
156.0 [0..2] [161..912]
gi|451659, gi|66... - gi|6680822|ref|NP_031605.1| calcium channel, voltage-dependent, N type, alpha 1B subunit [Mus muscul...
129.0 [0..17] [161..913]
gi|40738944, gi|... - gi|67540870|ref|XP_664209.1| hypothetical protein AN6605.2 [Aspergillus nidulans FGSC A4], ref|XP_41...
126.0 [0..2] [190..46]
gi|109464470 - gi|109464470|ref|XP_238213.4| PREDICTED: similar to delangin isoform A [Rattus norvegicus]
126.0 [0..4] [180..768]
gi|6690638, gi|2... - gi|6690638|gb|AAF24229.1|AF173882_1 N-type calcium channel alpha1B subunit [Bos taurus], gi|27807135...
126.0 [0..1] [161..913]

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Predicted Domain #1
Region A:
Residues: [1-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSRSPASP AHRRREKERS ERKKRRERRS REREAIGVAP AGGSGSGGAG RRDRERDRDR  60
   61 SRSRDRERER ERDRARSRRS RSRSRVAGGG GGGGGGGSSG GNSSSGPSTS RRTTRNNAAA 120
  121 TAADRPKINE ADLEGKSPEE VEMLKTMGFC TFDTTKNRKV EGNDVGEVHV ILKRKYRQYM 180
  181 NRKGGFNRPL DFVA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 112.468521
Match: PF08648.3
Description: No description for PF08648.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle