YRC Public Data Repository - Protein Structure Prediction

Protein:	yip3-PB, yip3-PA
Organism:	Drosophila melanogaster
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for yip3-PB, yip3-PA.

Description	E-value	Query Range	Subject Range
PSA_PYRAB - Proteasome subunit alpha OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=psmA PE=3 SV=1 PSMA_PYRAB - Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1	169.0	[0..6]	[187..31]
PSA_PYRHO - Proteasome subunit alpha OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC ... PSMA_PYRHO - Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1	169.0	[0..6]	[188..31]
PSA_PYRFU - Proteasome subunit alpha OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=p... PSMA_PYRFU - Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1	168.0	[0..6]	[188..31]
PSA_THEK1 - Proteasome subunit alpha OS=Thermococcus sp. (strain JCM 11816 / KS-1) GN=psmA PE=3 SV=1 PSA_THEK1, PSMA_... - Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1, Proteasome subunit alp... gi\|11265988 - pir\|\|T43887 proteasome alpha chain [imported] - Thermococcus sp	161.0	[0..6]	[190..31]
PSMA_PYRKO - Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1 PSA_THEKO - Proteasome subunit alpha OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=ps...	161.0	[0..6]	[190..31]
gi\|218186097 - gi\|218186097\|gb\|EEC68524.1\| hypothetical protein OsI_36813 [Oryza sativa Indica Group] PSA5_ORYSJ - Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1 PSA5_ORYSA - Proteasome subunit alpha type 5 (EC 3.4.25.1) (20S proteasome alpha subunit E) (20S proteasome subun...	154.0	[0..6]	[188..29]
gi\|16943777 - gi\|16943777\|emb\|CAD10778.1\| 20S proteasome subunit alpha V [Physcomitrella patens]	154.0	[0..6]	[188..29]
gi\|71746468 - gi\|71746468\|ref\|XP_822289.1\| proteasome subunit alpha 2 [Trypanosoma brucei TREU927] gi\|70831957 - gi\|70831957\|gb\|EAN77461.1\| proteasome alpha 2 subunit, putative [Trypanosoma brucei] PSA2_TRYBB - Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1	153.0	[0..7]	[190..26]
PSA5B_ARATH - Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2	152.0	[0..6]	[188..29]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEGESSKSI QGNIVGLKST NAVILATDSK EYEMYLIDDR IYCCAPRSGI DRNIVLEVSS  60
   61 KVANLVRDRG QNVTVSQVRD MFCEKYQTAE SPNVMIAGQD SRGLHLFSME CGKSRMVMYG 120
  121 AKGRDKENIV DFLSKDWNDF INLSEAEQLA RKALRWEHVE MCTIYRAKEI EEQGANMDFD 180
  181 MDDETSVSPA SNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.522879
Match:	1iruB
Description:	Proteasome alpha subunit (non-catalytic)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.6665721924779	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: