| Protein: | Vrp1-PK, Vrp1-PF |
| Organism: | Drosophila melanogaster |
| Length: | 708 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Vrp1-PK, Vrp1-PF.
| Description | E-value | Query Range |
Subject Range |
|
|
277.0 | [0..2] | [707..1136] |
|
Region A: Residues: [1-244] |
1 11 21 31 41 51
| | | | | |
1 MAIPPPPGPP PPPGPPPPPA MGGLKLGGAG GADARSALLS SIQKGTKLKK TTTVDKSGPA 60
61 LSGKVCGGDG GAGIGAKRTL NNNTSTSNHN NSSSSSNGLG NGTPKLGGLF EGLSQMPKLK 120
121 PVNGIRATPS AGSAATTTSK STTNSSAQQR SNSPPAATSA SNASNGPMDF NTELTKHLTL 180
181 KRQKQQQQQQ PQPPTNNTHI NATEANLRTN RGPPPQPPKS ANSNDSILER MNIPRTAPTP 240
241 PFGN
|
| Detection Method: |  |
| Confidence: | 1.59 |
| Match: | 1p9hA |
| Description: | CRYSTAL STRUCTURE OF THE COLLAGEN-BINDING DOMAIN OF YERSINIA ADHESIN YadA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [245-350] |
1 11 21 31 41 51
| | | | | |
1 SSSVKAASPT LSDSGSNSSG SGGGSGSVKS KAANLNISLG NSFVNSSKST VSASTASLNS 60
61 SLTSSTGSVR NLAPNKSTLF GGSSGSSSGS SSGGGYASVH KSSPPS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [351-549] |
1 11 21 31 41 51
| | | | | |
1 TADSTPSVTP TPPPLQLPMK PAISFGKPNF APKPPGLNQL AMANGQQRPA VTRHHSMKSP 60
61 RSPPAAGIVN GLVFPTQQHL GTLRGPLQFH GSESSSPNTS AGSMRCAPNP PKSRPSVKPP 120
121 PPPTPARSFS NTNLNNIGGS TMFSAVNTAL IQSSAISSQA PSPPITQPPS SSSSSNSVAA 180
181 LRDQFRGGAG MSNGAPSPP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [550-708] |
1 11 21 31 41 51
| | | | | |
1 LPPTPAPSSN PSSASASPKS LLRDNVKPII LNGGPLNPPA PPPHRSCPPP PPPQRQSSNG 60
61 GSGSGSAPVP PQRHSSIRPN APSTPPTHMA NASHQFGSSS GLSSGSGAGA AASVGRLVND 120
121 LETKFGKRFH NVTEFPKPPP FLNIQKVYPS RTFKATNGM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
