YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0308246, FBp...
Organism:	Drosophila melanogaster
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0308246, FBp....

Description	E-value	Query Range	Subject Range
FBpp0308244 - type=protein; loc=2R:join(17949064..17949086,17955932..17956176,17956241..17956818); ID=FBpp0308244;... gi\|220943044, gi... - gi\|220953182\|gb\|ACL89134.1\| CG42257-PD [synthetic construct], gi\|220943044\|gb\|ACL84065.1\| CG42257-PD...	181.0	[0..1]	[223..59]
gi\|254286458, gi... - gi\|254286458\|ref\|ZP_04961415.1\| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226], gi\|1... gi\|149741052, gi... - gi\|153825368\|ref\|ZP_01978035.1\| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2], gi\|1497... gi\|183179467, gi... - gi\|183179467\|ref\|ZP_02957678.1\| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3], gi\|1830... gi\|125621682, gi... - gi\|75820874\|ref\|ZP_00750912.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|229524236, gi... - gi\|229524236\|ref\|ZP_04413641.1\| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL4... gi\|194535875, gi... - gi\|75824346\|ref\|ZP_00753803.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... tr\|D7HE18\|D7HE18... - DNA polymerase III, epsilon subunit OS=Vibrio cholerae GN=dnaQ PE=4 SV=1, DNA polymerase III, epsilo... gi\|229332537, gi... - gi\|229528763\|ref\|ZP_04418153.1\| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)], gi\|22...	172.0	[0..3]	[222..8]
gi\|121586228, gi... - gi\|121586228\|ref\|ZP_01676018.1\| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80], gi\|12... gi\|227082357, gi... - gi\|227082357\|ref\|YP_002810908.1\| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2], gi\|227... gi\|153213799, gi... - gi\|153213799\|ref\|ZP_01949007.1\| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587], gi\|12411... gi\|153221253, gi... - gi\|153221253\|ref\|ZP_01952268.1\| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757], gi\|12... gi\|153817083, gi... - gi\|153817083\|ref\|ZP_01969750.1\| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457], gi\|... gi\|153820811, gi... - gi\|229512113\|ref\|ZP_04401592.1\| DNA polymerase III epsilon subunit [Vibrio cholerae B33], gi\|2293520... gi\|116190168, gi... - gi\|75831267\|ref\|ZP_00760532.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|147674786, gi... - gi\|75827523\|ref\|ZP_00756958.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|75817016, gi\|... - gi\|75817016\|ref\|ZP_00747472.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|9656792, gi\|1... - gi\|9656792\|gb\|AAF95377.1\| DNA polymerase III, epsilon subunit [Vibrio cholerae O1 biovar El Tor str.... gi\|229607196, gi... - gi\|229607196\|ref\|YP_002877844.1\| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236], gi\|22... gi\|11277850 - pir\|\|F82101 DNA polymerase III, epsilon chain VC2233 [imported] - Vibrio cholerae (strain N16961 ser... gi\|229519248, gi... - gi\|229519248\|ref\|ZP_04408691.1\| DNA polymerase III epsilon subunit [Vibrio cholerae RC9], gi\|2293439... gi\|229507692, gi... - gi\|229507692\|ref\|ZP_04397197.1\| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286], gi\|2...	171.0	[0..3]	[222..8]
gi\|125810973, gi... - gi\|54636873\|gb\|EAL26276.1\| GA19560-PA [Drosophila pseudoobscura], gi\|125810973\|ref\|XP_001361697.1\| G...	171.0	[0..1]	[218..424]
ERI2_MOUSE - ERI1 exoribonuclease 2 OS=Mus musculus GN=Eri2 PE=2 SV=1	170.0	[0..2]	[222..32]
gi\|86146863, gi\|... - gi\|86146863\|ref\|ZP_01065182.1\| DNA polymerase III subunit epsilon [Vibrio sp. MED222], gi\|85835315\|g...	169.0	[0..2]	[208..18]
gi\|27365234, gi\|... - gi\|27365234\|ref\|NP_760762.1\| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6], gi\|273613... gi\|37680713, gi\|... - gi\|37680713\|ref\|NP_935322.1\| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016], gi\|371994...	169.0	[0..3]	[210..8]
gi\|153837020, gi... - gi\|153837020\|ref\|ZP_01989687.1\| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810]... gi\|28807290, gi\|... - gi\|28899066\|ref\|NP_798671.1\| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD 221063... gi\|28807290 - gi\|28807290\|dbj\|BAC60555.1\| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 221063...	168.0	[0..3]	[210..8]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPYSYVIAV DFEATCWEKQ APPEWREAEI IEFPAVLVNL KTGKIEAEFH QYILPFESPR  60
   61 LSAYCTELTG IQQKTVDSGM PLRTAIVMFN EWLRNEMRAR NLTLPKMNKS NILGNCAFVT 120
  121 WTDWDFGICL AKECSRKGIR KPAYFNQWID VRAIYRSWYK YRPCNFTDAL SHVGLAFEGK 180
  181 AHSGIDDAKN LGALMCKMVR DGALFSITKD LTPYQQLNPR FVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	1zbuA
Description:	No description for 1zbuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits