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View Structure Prediction Details

Protein: CG9308-PA
Organism: Drosophila melanogaster
Length: 203 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9308-PA.

Description E-value Query
Range
Subject
Range
gi|109066641, gi... - gi|109066643|ref|XP_001091631.1| PREDICTED: similar to transmembrane emp24 protein transport domain ...
236.0 [0..3] [203..15]
TMED9 - transmembrane emp24 protein transport domain containing 9
234.0 [0..2] [203..22]
gi|54261696, gi|... - gi|89268685|emb|CAJ82691.1| transmembrane emp24 protein tra [Xenopus tropicalis], gi|58331996|ref|NP...
229.0 [0..4] [203..6]
TMED4_MOUSE - Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1
228.0 [0..5] [203..17]
gi|114613157 - gi|114613157|ref|XP_001145929.1| PREDICTED: transmembrane emp24 protein transport domain containing ...
228.0 [0..11] [203..23]
gi|149047669, gi... - gi|27697481|ref|XP_223611.1| PREDICTED: similar to transmembrane emp24 protein transport domain cont...
228.0 [0..4] [203..16]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSAIVLVLV LFQAACGFIV TLDAHETMCF YDHANVSDKV TVSFEVMEGG FKDVGVEIAG  60
   61 PDDDRLHHSK QDTMGSFTFT AMKEGRYQLC FDNKMSTMTP KILMFQFHVA RAIEFYMDSS 120
  121 KRVDDVIE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.975
Match: 2yrlA
Description: No description for 2yrlA was found.

Predicted Domain #2
Region A:
Residues: [129-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QATVQSMINQ LSAKLGAVKM EQEYMHFRYR GHLEVSDMVE LRVLAWSIFG PMMLIITAVL  60
   61 EVYYLKHFFE VKRVV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle