YRC Public Data Repository - Protein Structure Prediction

Protein:	CG9308-PA
Organism:	Drosophila melanogaster
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9308-PA.

Description	E-value	Query Range	Subject Range
gi\|109066641, gi... - gi\|109066643\|ref\|XP_001091631.1\| PREDICTED: similar to transmembrane emp24 protein transport domain ...	236.0	[0..3]	[203..15]
TMED9 - transmembrane emp24 protein transport domain containing 9	234.0	[0..2]	[203..22]
gi\|54261696, gi\|... - gi\|89268685\|emb\|CAJ82691.1\| transmembrane emp24 protein tra [Xenopus tropicalis], gi\|58331996\|ref\|NP...	229.0	[0..4]	[203..6]
TMED4_MOUSE - Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1	228.0	[0..5]	[203..17]
gi\|114613157 - gi\|114613157\|ref\|XP_001145929.1\| PREDICTED: transmembrane emp24 protein transport domain containing ...	228.0	[0..11]	[203..23]
gi\|149047669, gi... - gi\|27697481\|ref\|XP_223611.1\| PREDICTED: similar to transmembrane emp24 protein transport domain cont...	228.0	[0..4]	[203..16]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSAIVLVLV LFQAACGFIV TLDAHETMCF YDHANVSDKV TVSFEVMEGG FKDVGVEIAG  60
   61 PDDDRLHHSK QDTMGSFTFT AMKEGRYQLC FDNKMSTMTP KILMFQFHVA RAIEFYMDSS 120
  121 KRVDDVIE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.975
Match:	2yrlA
Description:	No description for 2yrlA was found.

Predicted Domain #2

Region A:
Residues: [129-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QATVQSMINQ LSAKLGAVKM EQEYMHFRYR GHLEVSDMVE LRVLAWSIFG PMMLIITAVL  60
   61 EVYYLKHFFE VKRVV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits