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View Structure Prediction Details

Protein: Pu-PA
Organism: Drosophila melanogaster
Length: 324 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Pu-PA.

Description E-value Query
Range
Subject
Range
gi|38455524, gi|... - gi|38455524|gb|AAR20862.1| punch [Drosophila melanogaster], gi|38455519|gb|AAR20859.1| punch [Drosop...
462.0 [0..1] [324..1]

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Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTRQLSEM SASELNDAID DTNFPQAHIL SRGRNNSVCS TSSTSGTSSL ADRQQNQAEE  60
   61 ATAIAGTPVE E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [72-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VAPAPALVPL AGNQRPRLIL KTNGSSPDSD GTQPKTPLTP RTSTTPGHEK CTFHHDLELD  60
   61 HKPPTREALL PDMARSYRLL LGGLGENPDR QGLIKTPERA AKAMLYFTKG YDQSLEDVLN 120
  121 GAVFDEDHDE MVVVKDIEMF SMCEHHLVPF YGKVSIGYLP CNKILGLSKL ARIVEIFSRR 180
  181 LQVQERLTKQ IAVAVTQAVQ PAGVAVVVEG VHMCMVMRGV QKINSKTVTS TMLGVFRDDP 240
  241 KTREEFLNLV NSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.39794
Match: 1is7A
Description: GTP cyclohydrolase I
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle