YRC Public Data Repository - Protein Structure Prediction

Protein:	mago-PA
Organism:	Drosophila melanogaster
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mago-PA.

Description	E-value	Query Range	Subject Range
gi\|109472730, gi... - gi\|109474348\|ref\|XP_001069775.1\| PREDICTED: similar to mago-nashi homolog [Rattus norvegicus], gi\|10...	298.0	[0..4]	[147..61]
gi\|218186682 - gi\|218186682\|gb\|EEC69109.1\| hypothetical protein OsI_38020 [Oryza sativa Indica Group] MGN_ORYSJ - Protein mago nashi homolog OS=Oryza sativa subsp. japonica GN=Os12g0287200 PE=2 SV=2 MGN_ORYSA - Protein mago nashi homolog (Mago nashi-like protein) - Oryza sativa (Rice)	298.0	[0..5]	[147..16]
gi\|33358223, gi\|... - gi\|33358223\|pdb\|1HL6\|D Chain D, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago Complex, gi\|...	293.0	[0..1]	[147..1]
gi\|108872119, gi... - gi\|157129592\|ref\|XP_001655409.1\| mago nashi, putative [Aedes aegypti], gi\|157126173\|ref\|XP_001660832...	293.0	[0..2]	[147..4]
gi\|225717370 - gi\|225717370\|gb\|ACO14531.1\| mago nashi homolog [Esox lucius] gi\|216263217 - gi\|216263217\|gb\|ACJ72014.1\| mago-nashi [Galaxias depressiceps] gi\|229367238 - gi\|229367238\|gb\|ACQ58599.1\| mago nashi homolog [Anoplopoma fimbria] MGN_SALSA - Protein mago nashi homolog OS=Salmo salar GN=magoh PE=2 SV=1 MGN_DANRE - Protein mago nashi homolog OS=Danio rerio GN=magoh PE=2 SV=1	292.0	[0..1]	[147..1]
gi\|125811564\|ref... - GA21763-PA [Drosophila pseudoobscura], GA21763 [Drosophila pseudoobscura pseudoobscura] gi\|194110761, gi... - gi\|195170192\|ref\|XP_002025897.1\| GL10152 [Drosophila persimilis], gi\|194110761\|gb\|EDW32804.1\| GL1015... gi\|54637097, gi\|... - gi\|54637097\|gb\|EAL26500.1\| GA21763 [Drosophila pseudoobscura pseudoobscura], gi\|125811564\|ref\|XP_001...	292.0	[0..1]	[147..1]
AGAP010755-PA - protein mago nashi\|protein_coding\|3L:9851070:9851613:1\|gene:AGAP010755 gi\|116118651, gi... - gi\|119112851\|ref\|XP_318556.2\| AGAP010755-PA [Anopheles gambiae str. PEST], gi\|116118651\|gb\|EAA13707....	291.0	[0..2]	[147..3]
MAGOHB - mago-nashi homolog B (Drosophila)	288.0	[0..4]	[147..5]
gi\|57106514, gi\|... - gi\|73958681\|ref\|XP_850352.1\| PREDICTED: similar to mago-nashi homolog [Canis familiaris], gi\|5710651... MGN2_BOVIN - Protein mago nashi homolog 2 OS=Bos taurus GN=MAGOHB PE=2 SV=1 gi\|149713919 - gi\|149713919\|ref\|XP_001500370.1\| PREDICTED: similar to Mago-nashi homolog 2 [Equus caballus] gi\|109095628 - gi\|109095628\|ref\|XP_001115410.1\| PREDICTED: similar to mago-nashi homolog isoform 2 [Macaca mulatta] gi\|114643564 - gi\|114643564\|ref\|XP_520743.2\| PREDICTED: hypothetical protein [Pan troglodytes]	288.0	[0..4]	[147..5]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTEDFYLRY YVGHKGKFGH EFLEFEFRPD GKLRYANNSN YKNDTMIRKE AFVHQSVMEE  60
   61 LKRIIIDSEI MQEDDLPWPP PDRVGRQELE IVIGDEHISF TTSKTGSLVD VNRSKDPEGL 120
  121 RCFYYLVQDL KCLVFSLIGL HFKIKPI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.09691
Match:	1hl6B
Description:	Mago nashi protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits