YRC Public Data Repository - Protein Structure Prediction

Protein:	CG11110-PA
Organism:	Drosophila melanogaster
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG11110-PA.

Description	E-value	Query Range	Subject Range
gi\|54636165\|gb\|E... - GA10765-PA [Drosophila pseudoobscura], GA10765 [Drosophila pseudoobscura pseudoobscura] gi\|54636165, gi\|... - gi\|54636165\|gb\|EAL25568.1\| GA10765 [Drosophila pseudoobscura pseudoobscura], gi\|125809120\|ref\|XP_001...	176.0	[0..1]	[166..1]
gi\|58378407, gi\|... - gi\|58378407\|ref\|XP_308434.2\| ENSANGP00000018428 [Anopheles gambiae str. PEST], gi\|55245495\|gb\|EAA046...	176.0	[0..1]	[165..1]
gi\|14030458 - gi\|14030458\|gb\|AAK52906.1\| inner mitochondrial membrane peptidase 2 [Mus musculus]	173.0	[0..3]	[165..12]
gi\|46119422, gi\|... - gi\|67923384\|ref\|ZP_00516864.1\| Signal peptidase I [Crocosphaera watsonii WH 8501], gi\|67854765\|gb\|EA...	171.0	[0..3]	[169..22]
gi\|83572735, gi\|... - gi\|83589821\|ref\|YP_429830.1\| signal peptidase I [Moorella thermoacetica ATCC 39073], gi\|83572735\|gb\|...	168.0	[0..3]	[150..19]
gi\|17230467, gi\|... - gi\|17230467\|ref\|NP_487015.1\| hypothetical protein alr2975 [Nostoc sp. PCC 7120], gi\|17132069\|dbj\|BAB... gi\|25327710 - pir\|\|AH2177 hypothetical protein alr2975 [imported] - Nostoc sp. (strain PCC 7120)	168.0	[0..2]	[149..17]
gi\|75700879, gi\|... - gi\|75907154\|ref\|YP_321450.1\| thylakoidal processing peptidase [Anabaena variabilis ATCC 29413], gi\|7...	166.0	[0..2]	[149..17]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFRFFGKSL LYALPLGVTF LDCVGYVARV DGISMQPALN PVPDEKDYVF LLRWGTHNSQ  60
   61 VERGDIISLI SPKDPAQKII KRVVGLQGDV VSTLGYKHEI VRVPEGHCWV EGDHTGHSMD 120
  121 SNTFGPVALG LMSARAVAIV WPPERWRILE NELPRRRRPI QASKNSSNYY N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	1t7dA
Description:	Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits